Detail information of GWHGAAZE003789


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN29872.15.22162E-20Choline-phosphate cytidylyltransferase B [Glycine soja]
Swissprottr|F4JJE0|CCT2_ARATH9E-19Choline-phosphate cytidylyltransferase 2
trEMBLtr|F6HTN6|F6HTN6_VITVI2E-20Putative uncharacterized protein {ECO:0000313|EMBL:CCB58046.1}
TAIR10AT4G15130.11E-15phosphorylcholine cytidylyltransferase2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene104334860104335456-
GWHAAZE00000001mRNA104334860104335456-
GWHAAZE00000001exon104334860104334994-
GWHAAZE00000001exon104335112104335159-
GWHAAZE00000001exon104335433104335456-
GWHAAZE00000001CDS104335433104335456-
GWHAAZE00000001CDS104335112104335159-
GWHAAZE00000001CDS104334860104334994-
Transcript Sequence

Network for GWHGAAZE003789

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00968PCYT1 Metabolic pathways map01100
Glycerophospholipid metabolismmap00564
Phosphonate and phosphinate metabolismmap00440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.554
SRR3591706second leaf0.213
SRR3591707mature leaf1.507
SRR3591708Shoot apex1.695
SRR3591709Stem0.890
SRR3591710White floral bud17.596
SRR3591711White flower1.622
SRR3591712Green floral bud14.541
SRR3591713Yellow flower2.819
SRP173429 SRR8316895Juvenile bud stage 2.700
SRR8316896Juvenile bud stage 6.653
SRR8316897Juvenile bud stage 1.136
SRR8316894Third green stage 4.102
SRR8316900Third green stage 13.467
SRR8316901Third green stage 15.594
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.453
SRR8316903Complete white stage 1.109
SRR8316902Silver flowering stage0.157
SRR8316904Silver flowering stage0.518
SRR8316905Silver flowering stage0.937
SRR8316906Gold flowering stage 0.780
SRR8316907Gold flowering stage 0.711
SRR8316908Gold flowering stage 1.462
SRP132670SRR6706286Control9.766
SRR6706287Light intensity 50%8.658
SRR6706288Light intensity 20%7.867
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.407
CNS0095593Slightly white alabastrum(diploid) 26.620
CNS0095594Slightly white alabastrum(diploid) 314.326
CNS0095595Whole white alabastrum(diploid) 217.580
CNS0095596Whole white alabastrum(diploid) 322.470
CNS0095597Whole white alabastrum(diploid) 414.913
CNS0095598Silvery flower (diploied) 14.700
CNS0095599Silvery flower (diploied) 25.978
CNS0095600Silvery flower (diploied) 31.875
CNS0095601Golden flower (diploid) 16.381
CNS0095602Golden flower (diploid) 21.353
CNS0095603Golden flower (diploid) 32.290
CNS0095604Slightly white alabastrum(tetraploid) 112.923
CNS0095605Slightly white alabastrum(tetraploid) 213.605
CNS0095606Slightly white alabastrum(tetraploid) 32.124
CNS0095607Whole white alabastrum(tetraploid) 116.778
CNS0095608Whole white alabastrum(tetraploid) 221.487
CNS0095609Whole white alabastrum(tetraploid) 313.949
CNS0095610Silvery flower (tetraploid) 12.971
CNS0095611Silvery flower (tetraploid) 24.422
CNS0095612Silvery flower (tetraploid) 33.961
CNS0095613Golden flower (tetraploid) 12.331
CNS0095614Golden flower (tetraploid) 24.892
CNS0095615Golden flower (tetraploid) 33.079
CRA001975CRR073297Stem 17.916
CRR073298Stem 28.886
CRR073299Stem 36.420
CRR073300Leaf 18.234
CRR073301Leaf 29.874
CRR073302Leaf 35.678
CRR073303Juvenile bud 18.155
CRR073304Juvenile bud 28.435
CRR073305Juvenile bud 33.808
CRR073306Third green 13.692
CRR073307Third green 24.431
CRR073308Third green 34.055
CRR073309Second white 10.256
CRR073310Second white 23.328
CRR073311Second white 31.857
CRR073312Silver flowering 11.829
CRR073313Silver flowering 23.656
CRR073314Silver flowering 33.521
CRR073315Gold flowering 15.234
CRR073316Gold flowering 23.216
CRR073317Gold flowering 34.361
CRR073318Tawny withering 17.299
CRR073319Tawny withering 26.218
CRR073320Tawny withering 37.777