Gene detail

Detail information of GWHGAAZE003791

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006429777.1	0	hypothetical protein CICLE_v10011953mg [Citrus clementina]
COG	YP_004641919.1	1E-54	pectinesterase
Swissprot	tr\|O23038\|PME8_ARATH	7E-180	Probable pectinesterase 8 (Precursor)
trEMBL	tr\|V4SQN7\|V4SQN7_9ROSI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT1G05310.1	5E-127	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	104355948	104357904	-
GWHAAZE00000001	mRNA	104355948	104357904	-
GWHAAZE00000001	exon	104355948	104356107	-
GWHAAZE00000001	exon	104356223	104356482	-
GWHAAZE00000001	exon	104356634	104356840	-
GWHAAZE00000001	exon	104356983	104357154	-
GWHAAZE00000001	exon	104357522	104357904	-
GWHAAZE00000001	CDS	104357522	104357904	-
GWHAAZE00000001	CDS	104356983	104357154	-
GWHAAZE00000001	CDS	104356634	104356840	-
GWHAAZE00000001	CDS	104356223	104356482	-
GWHAAZE00000001	CDS	104355948	104356107	-

Transcript Sequence
>GWHTAAZE003797 ATGAATAGTTTCAGAGGAATATCTTTCTTTCTTCTCATTGCCCTTTTGGCATCAAACCATTTCATGTCTCCACATTTTCTTGATTTTAGTATCACTACCTTGTTATCATCCTTATTTGTCACTAATAACATTCCAACACTACAAATAATGTCACAGAGTAGAAATCATCATAGCCATCACCACGAAAACAACAGTAAAAAAATAACGTCCATATGCGATAATTTCCCACCTAATTTCCCCCCTCCTGACACTAATACCACTTCTACAATTTGTGTTGATCGCAATGGATGCTGTAATTTCACCACAGTGCAGTCTGCAGTTGACGCCGTCACGGTTCTTAGTCCCAAAAGAACCATAATATGGATCAACACCGGAATTTACTTCGAGAAAGTAAATGTTCCAAGAAACAAGCCAAATATAACGTTTCAAGGTCAAGGGTATACTTCCACAGCGATCGTGTGGAATGACACGGCCAATTCATCGCATGGCACGTTTTACAGCGCATCCGTTCAAGTTTTTGCTCCCAACTTCATTGCTAAGAACATAAGTTTCATGAATGTAGCTCCCATACCGAAGCCGGGTGATGTAGGAGCACAGGCAGTGGCGATGAGAATAGCGGGAGACGGGGCGGCCTTTTGGGGGTGCGGATTCTTTGGAGCACAAGACACACTTCATGATGATAGGGGTCGCCATTACTTCGAGGACTGCTACATTCAAGGCTCTATTGACTTCATCTTTGGCAATGCCAAGTCCTTTTACCAGGATTGTCAATTAACGTCTATGGCGAACCCAGTAGCAGCAGGTCAAAGGTTGATAAATGGAGCAGTTACAGCACATGGGCGAGCTTCAGCGGACGAGAACAGTGGATTTGCATTTGTGAACTGCGCCATAGGTGGGACGGGAAGAATATGGCTAGGCCGAGCATGGAGGCCTTTCTCTAGAGTTGTCTTCTCTTATACTTCCATGACTGATATCATTGCTCCAGAGGGTTGGAATGATTTCAATGACCCAACCAGAGATCAGAGTATCTTCTTTGGAGAATACATGTGCACGGGTGCGGGAGCTAATACGACAATGAGAGCGCCTTACGCGCAGATACTAAATGACACTCAAGCTTCTGCTTTTCTTAATGCATCCTCCTTCATTGATGCTGATCAGTGGTTGCTACCTTTCTCTAGCTGA

Network for GWHGAAZE003791

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	90	384	8.50E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.188
	SRR3591706	second leaf	2.097
	SRR3591707	mature leaf	0.214
	SRR3591708	Shoot apex	0.836
	SRR3591709	Stem	6.657
	SRR3591710	White floral bud	3.652
	SRR3591711	White flower	1.181
	SRR3591712	Green floral bud	2.888
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.555
	SRR8316896	Juvenile bud stage	1.918
	SRR8316897	Juvenile bud stage	0.453
	SRR8316894	Third green stage	1.291
	SRR8316900	Third green stage	8.486
	SRR8316901	Third green stage	5.830
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.238
	SRR8316903	Complete white stage	0.902
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.078
	SRR8316905	Silver flowering stage	0.067
	SRR8316906	Gold flowering stage	0.153
	SRR8316907	Gold flowering stage	0.003
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	7.020
	SRR6706287	Light intensity 50%	5.383
	SRR6706288	Light intensity 20%	5.955
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.322
	CNS0095593	Slightly white alabastrum(diploid) 2	0.602
	CNS0095594	Slightly white alabastrum(diploid) 3	0.449
	CNS0095595	Whole white alabastrum(diploid) 2	0.582
	CNS0095596	Whole white alabastrum(diploid) 3	0.314
	CNS0095597	Whole white alabastrum(diploid) 4	0.995
	CNS0095598	Silvery flower (diploied) 1	0.019
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.950
	CNS0095601	Golden flower (diploid) 1	0.066
	CNS0095602	Golden flower (diploid) 2	0.574
	CNS0095603	Golden flower (diploid) 3	0.198
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.019
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.320
	CNS0095610	Silvery flower (tetraploid) 1	0.099
	CNS0095611	Silvery flower (tetraploid) 2	0.042
	CNS0095612	Silvery flower (tetraploid) 3	0.054
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.038
	CNS0095615	Golden flower (tetraploid) 3	0.298
CRA001975	CRR073297	Stem 1	0.356
	CRR073298	Stem 2	0.982
	CRR073299	Stem 3	0.727
	CRR073300	Leaf 1	2.175
	CRR073301	Leaf 2	0.637
	CRR073302	Leaf 3	1.456
	CRR073303	Juvenile bud 1	0.245
	CRR073304	Juvenile bud 2	0.030
	CRR073305	Juvenile bud 3	0.211
	CRR073306	Third green 1	0.137
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.122
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.137
	CRR073319	Tawny withering 2	1.606
	CRR073320	Tawny withering 3	1.496