Gene detail

Detail information of GWHGAAZE003809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280962.2	2.1467E-122	PREDICTED: uncharacterized protein LOC100254596 [Vitis vinifera]
trEMBL	tr\|F6HKR0\|F6HKR0_VITVI	1E-122	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55482.1}
TAIR10	AT2G36000.1	1E-57	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	104807355	104808356	-
GWHAAZE00000001	mRNA	104807355	104808356	-
GWHAAZE00000001	exon	104807355	104808356	-
GWHAAZE00000001	CDS	104807355	104808356	-

Transcript Sequence
>GWHTAAZE003815 ATGGTAGAAACACTACACCTTTCCTCCACCAACAATCCCTTCCCTAAGCCCAATTTTCAATCCAAACATTCCTCTATTATCCCTCCACTTTCCCGTCCAAGAAACCTCAATTTTCCCCCCACCACGACGACCAAAACCTCCATAATTTCCCCCCTTCCAATCCCACCCAGAACCTCAACCCAGCCTCATCAACCCCTCCCTCACAATCCTAATTCCTCCGAATTCCAAGAAAAACTTCTCTTCCTCGATTCTCTCGGCCTCGACTTCTTCTCCCTCGTTACAACCCACCCTCCCATTGTCTCCGCCTCAATCTCCGCAATTAAATCAACAATCTCTTTCTTGTATACTGTCGGCTTAACTCCGCAAGATCTCCGCCGGGCACTCAGCATGTGCCCGGACATCATTACTTCTCCCGACGTCGTGGGAGTCCTCACCTTCCTCCTCCGCGACGTCGGGGTTGAAGGCCGCCAACTCAGGCAAGTTATCCGCCGCCGCCCCCGTCTCCTCGCCTGCAGCGTGGAGCAACGACTCCGCCCCACGCTCTACTTCCTCCAAGGCACTATCGGAATCCCCGACCTACGCGGTCATACTCAACTCCTTTCCTGCTCGGTCGAATCCAAATTCGTTCCTCGAATCGAGTACATTCAGAAACTAGGGTTTTCGTACAATGACACCATTTCTATGTTTCGGAGATTCCCTTCATTGTTTTGTTACGGTATAGAGCAGAATTTGGAGCCCAAGTTCAATTACTTTATGGTGGAAATGGGGAGGGATTTGAAGGAATTGAAGGAGTTTCCGCAGTATTTTTCCTTTAGTTTAGAGAATCGGATTAAGCCGAGACATCGGCATTGTGTGGAGAAGGGGGTTTGCTTGTCGCTGCCGGTTATGCTAAGATTGAATAATGAGCGATTTCGTGAGAGATTGGAGGTTTGTTGTAGCTCGACAATGCCGGTGAGAACTTCTCCCTTGTGGTGTATAAATTATGATGATCATGTATTATAG

Network for GWHGAAZE003809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	148	304	3.40E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.035
	SRR3591706	second leaf	18.179
	SRR3591707	mature leaf	15.310
	SRR3591708	Shoot apex	22.445
	SRR3591709	Stem	8.522
	SRR3591710	White floral bud	5.500
	SRR3591711	White flower	5.342
	SRR3591712	Green floral bud	4.120
	SRR3591713	Yellow flower	4.183
SRP173429	SRR8316895	Juvenile bud stage	4.872
	SRR8316896	Juvenile bud stage	8.401
	SRR8316897	Juvenile bud stage	3.376
	SRR8316894	Third green stage	2.700
	SRR8316900	Third green stage	7.726
	SRR8316901	Third green stage	6.426
	SRR8316898	Complete white stage	2.605
	SRR8316899	Complete white stage	6.103
	SRR8316903	Complete white stage	5.626
	SRR8316902	Silver flowering stage	2.474
	SRR8316904	Silver flowering stage	3.218
	SRR8316905	Silver flowering stage	2.363
	SRR8316906	Gold flowering stage	6.743
	SRR8316907	Gold flowering stage	6.487
	SRR8316908	Gold flowering stage	5.037
SRP132670	SRR6706286	Control	6.711
	SRR6706287	Light intensity 50%	5.117
	SRR6706288	Light intensity 20%	4.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.079
	CNS0095593	Slightly white alabastrum(diploid) 2	7.770
	CNS0095594	Slightly white alabastrum(diploid) 3	5.695
	CNS0095595	Whole white alabastrum(diploid) 2	4.441
	CNS0095596	Whole white alabastrum(diploid) 3	4.907
	CNS0095597	Whole white alabastrum(diploid) 4	2.678
	CNS0095598	Silvery flower (diploied) 1	7.183
	CNS0095599	Silvery flower (diploied) 2	6.403
	CNS0095600	Silvery flower (diploied) 3	5.301
	CNS0095601	Golden flower (diploid) 1	7.487
	CNS0095602	Golden flower (diploid) 2	8.546
	CNS0095603	Golden flower (diploid) 3	9.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.970
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.177
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.320
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.689
	CNS0095610	Silvery flower (tetraploid) 1	5.958
	CNS0095611	Silvery flower (tetraploid) 2	9.123
	CNS0095612	Silvery flower (tetraploid) 3	8.567
	CNS0095613	Golden flower (tetraploid) 1	7.017
	CNS0095614	Golden flower (tetraploid) 2	5.890
	CNS0095615	Golden flower (tetraploid) 3	11.497
CRA001975	CRR073297	Stem 1	17.027
	CRR073298	Stem 2	12.070
	CRR073299	Stem 3	16.868
	CRR073300	Leaf 1	11.249
	CRR073301	Leaf 2	13.591
	CRR073302	Leaf 3	8.234
	CRR073303	Juvenile bud 1	9.930
	CRR073304	Juvenile bud 2	7.850
	CRR073305	Juvenile bud 3	12.402
	CRR073306	Third green 1	4.482
	CRR073307	Third green 2	6.024
	CRR073308	Third green 3	5.875
	CRR073309	Second white 1	4.171
	CRR073310	Second white 2	4.435
	CRR073311	Second white 3	5.169
	CRR073312	Silver flowering 1	4.747
	CRR073313	Silver flowering 2	8.108
	CRR073314	Silver flowering 3	7.352
	CRR073315	Gold flowering 1	85.171
	CRR073316	Gold flowering 2	81.783
	CRR073317	Gold flowering 3	80.816
	CRR073318	Tawny withering 1	21.964
	CRR073319	Tawny withering 2	11.596
	CRR073320	Tawny withering 3	22.527