Detail information of GWHGAAZE003819


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011094228.11.37028E-85PREDICTED: protein YLS9-like [Sesamum indicum]
Swissprottr|Q9SJ52|YLS9_ARATH1E-67Protein YLS9
trEMBLtr|Q75QH3|Q75QH3_CAPCH5E-86Hin1 like protein {ECO:0000313|EMBL:BAD11071.1}
TAIR10AT2G35980.15E-55Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene105083795105084460+
GWHAAZE00000001mRNA105083795105084460+
GWHAAZE00000001exon105083795105083889+
GWHAAZE00000001exon105083923105084460+
GWHAAZE00000001CDS105083795105083889+
GWHAAZE00000001CDS105083923105084460+
Transcript Sequence

Network for GWHGAAZE003819

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03168.14LEA_2951982.30E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf450.695
SRR3591706second leaf105.935
SRR3591707mature leaf22.848
SRR3591708Shoot apex331.131
SRR3591709Stem399.340
SRR3591710White floral bud267.284
SRR3591711White flower265.634
SRR3591712Green floral bud128.061
SRR3591713Yellow flower198.830
SRP173429 SRR8316895Juvenile bud stage 380.717
SRR8316896Juvenile bud stage 353.475
SRR8316897Juvenile bud stage 266.424
SRR8316894Third green stage 77.421
SRR8316900Third green stage 121.887
SRR8316901Third green stage 248.826
SRR8316898Complete white stage 16.713
SRR8316899Complete white stage 407.759
SRR8316903Complete white stage 33.974
SRR8316902Silver flowering stage19.204
SRR8316904Silver flowering stage13.108
SRR8316905Silver flowering stage22.933
SRR8316906Gold flowering stage 94.548
SRR8316907Gold flowering stage 78.229
SRR8316908Gold flowering stage 82.240
SRP132670SRR6706286Control37.528
SRR6706287Light intensity 50%51.985
SRR6706288Light intensity 20%32.454
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1181.027
CNS0095593Slightly white alabastrum(diploid) 2336.285
CNS0095594Slightly white alabastrum(diploid) 3258.387
CNS0095595Whole white alabastrum(diploid) 2189.181
CNS0095596Whole white alabastrum(diploid) 318.334
CNS0095597Whole white alabastrum(diploid) 4168.827
CNS0095598Silvery flower (diploied) 1706.369
CNS0095599Silvery flower (diploied) 2658.836
CNS0095600Silvery flower (diploied) 3271.451
CNS0095601Golden flower (diploid) 1669.634
CNS0095602Golden flower (diploid) 2384.440
CNS0095603Golden flower (diploid) 3368.657
CNS0095604Slightly white alabastrum(tetraploid) 13.503
CNS0095605Slightly white alabastrum(tetraploid) 26.584
CNS0095606Slightly white alabastrum(tetraploid) 314.374
CNS0095607Whole white alabastrum(tetraploid) 14.400
CNS0095608Whole white alabastrum(tetraploid) 23.323
CNS0095609Whole white alabastrum(tetraploid) 38.652
CNS0095610Silvery flower (tetraploid) 113.217
CNS0095611Silvery flower (tetraploid) 27.062
CNS0095612Silvery flower (tetraploid) 395.351
CNS0095613Golden flower (tetraploid) 130.153
CNS0095614Golden flower (tetraploid) 213.031
CNS0095615Golden flower (tetraploid) 329.443
CRA001975CRR073297Stem 1183.489
CRR073298Stem 2232.510
CRR073299Stem 3269.441
CRR073300Leaf 1342.738
CRR073301Leaf 2520.141
CRR073302Leaf 3235.791
CRR073303Juvenile bud 1249.820
CRR073304Juvenile bud 2363.600
CRR073305Juvenile bud 3591.722
CRR073306Third green 1250.774
CRR073307Third green 2366.770
CRR073308Third green 3282.079
CRR073309Second white 1246.854
CRR073310Second white 2201.029
CRR073311Second white 3197.867
CRR073312Silver flowering 1822.516
CRR073313Silver flowering 2909.705
CRR073314Silver flowering 3850.729
CRR073315Gold flowering 1187.037
CRR073316Gold flowering 2280.098
CRR073317Gold flowering 3349.947
CRR073318Tawny withering 1264.314
CRR073319Tawny withering 2486.385
CRR073320Tawny withering 3353.560