Gene detail

Detail information of GWHGAAZE003828

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027975.1	0	UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
COG	NP_489381.1	0.000002	hypothetical protein all5341
Swissprot	tr\|Q6DW74\|DGDG1_LOTJA	0	Digalactosyldiacylglycerol synthase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A061EVM7\|A0A061EVM7_THECC	0	UDP-Glycosyltransferase superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY08477.1}
TAIR10	AT3G11670.1	0	UDP-Glycosyltransferase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	105346802	105362262	+
GWHAAZE00000001	mRNA	105346802	105362262	+
GWHAAZE00000001	exon	105346802	105347244	+
GWHAAZE00000001	exon	105348325	105348529	+
GWHAAZE00000001	exon	105351350	105351382	+
GWHAAZE00000001	exon	105351760	105351847	+
GWHAAZE00000001	exon	105354668	105355146	+
GWHAAZE00000001	exon	105357733	105357999	+
GWHAAZE00000001	exon	105359262	105359611	+
GWHAAZE00000001	exon	105361737	105362262	+
GWHAAZE00000001	CDS	105346802	105347244	+
GWHAAZE00000001	CDS	105348325	105348529	+
GWHAAZE00000001	CDS	105351350	105351382	+
GWHAAZE00000001	CDS	105351760	105351847	+
GWHAAZE00000001	CDS	105354668	105355146	+
GWHAAZE00000001	CDS	105357733	105357999	+
GWHAAZE00000001	CDS	105359262	105359611	+
GWHAAZE00000001	CDS	105361737	105362262	+

Transcript Sequence
>GWHTAAZE003834 ATGATCAATTTCAAACCACCTGATACGGCAACATCATCATCGTCACCAACCACAGCCGTCACGGCTGAGAAAGCCTTTTCATTCATATCAAAAGGATGGAGAGAAGTTAAAGATTCGGCCGATGCGGATCTTCAGTTGATAAAAAACAGAGCCAATCGGTTCAAGAACATAGCCTCTTCGTTCGATCGGGAGTTCGAGAACTTCATCAATTCGGCCTCGAAATCCACGACCTTCTCGGTCCCTTCGATTGGAACGTCGACGGAGATTGATTTTGTTAAGAGGTTGCAGCCGAAGATAACCGAGTTTCGGAGGGCCTATTCTTCGCCGGATTTTAGTCGGAGGGTTTTGGAGAAGTGGAGACCTACTACGAGGCTCAAGATTGATTTGTCGGCGTTTAGGAAGGCGATTGAGTCCGAGGTGGACGATTATGATGAAAGAGAGAGGTATCAGTGGGGGAGGAGGTTGAGCTATAAGGAATTTAGGTGGGAGTGGAAGGGCGATGGAGAGGAAGAAGGGCAAGTGAAGGATTGGGAACCAATTAGGGCGTTGAAGACGAGGTTAAAGGTTTTGGAGCAGAAGAGTTCATCGAATGATTTGTTTGAGGGCTTTAAGAACAGCGAATTTGTGGAGAAAGTGAAAGCTAGTTTGAAAGCAATTTGCAAGGAGCCAAATGAATCAAAGGAAGTTCCGCCTCTGGATGTACCTGAACTTTTGGCATATTTTGTTAGGCAGTCTGGGCCATTTTTGGATCACCTTGGCCTTGGAAAAGATATATCTGAGAAGATAGTATACAGCTTGTGCAGCAAACGCAAGTTAATGCGCTCCCTTCCCTCAGGAGAATCTTCCATTGTTGAAAGCGATAATGGCAGTGATGAACTTGATCTAAGGATAGCCAGTGTCCTCCAAAGTACAGGGCATAGGTATGAGGGTGGCTTCTGGACCGACTCTTCCCCAAAATACGATCCCAGAGACAGGAAAAGACATGTAGCCATTGTTACAACAGCTAGCCTTCCTTGGATGACGGGAACAGCTGTGAATCCATTGTTTCGAGCTGCATATTTAGCCAAGTCTGCAAGGCAAAATGTCACACTATTGGTTCCATGGCTTTGTAGATCCGACCAAGAAATAGTTTATCCAAACAATCTCACATTTAGCTCACCTGAAGAACAAGAGGTTTATATACGTAACTGGCTTGAGGAAAGGGTCGGTTTTAAGGCTGATTTCAAAATCTCATTCTACCCAGGAAAGTTTTCAAAACAAAGGAGAAGTATAATACCAGCTGGAGATACTTCACAGTTTATTTCTTCAAAAGAGGCCGACATCGCCATACTGGAAGAACCAGAGCATCTGAACTGGTACCACCATGGTAAACGCTGGACTGACAAATTCAACCATGTTGTTGGTATTGTTCACACCAATTACTTGGAATATATCAAGAGGGAGCATAATGGGCCTCTAAAAGCTTTCTTTGTCAAGCACATAAACACTTGGGTTACCAGAGCATACTGCAACAAGGTTCTTCGCCTTTCTGCCGCTACCCAAGATTTACCCAGGTCCATAATTTGCAATGTTCATGGAGTGAATCCTAAGTTTTTGAAAATTGGGGAAAAAGTGGCAGAAGAAAGGGAGAGTGGTAAGCAAGCCTTTTCACAAGGAGCTTATTTCTTGGGAAAGATGGTTTGGGCTAAAGGATACAGGGAGTTGATAGATTTATTGGCTAAGCAAAAAAGTGATCTCGATGGCTTCAAATTGGACGTCTTTGGTAATGGAGAGGATGCTCATGAAGTCCAGAGCACTGCTAAACGGTTGGATCTGAGGCTCAATTTTATGAAGGGCCGAGATCATGCGGATGATTCTCTCCACGGCTACAAGGTGTTCATAAACCCCAGCGTTAGTGATGTGCTCTGCACGGCCACAGCCGAGGCCCTAGCAATGGGAAAATTTGTAATTTGTGCCGAACATCCATCAAACGAGTTCTTCCGTTCATTCCCCAACTGCCTAACATACAAAACCCCCGAAGACTTTGTCTCGAAAGTTAGAGAAGCAATGACCAAAGAACCCCTCCCTTTAACTCCCGAGCAAAGATACAACCTCTCATGGGAGGCTGCCACGCAGAGATTCATGGAGCATTCGGATCTCGAAACCGTCTTAAACAAAGAGTTACGGGACCCACGATCCAACGGTAATGAAATGATGAAGTCGGCTTCAATGCCTAATCTAACGGACATGATTGATGGAGGGTTGTCATTTGCCCACTTTTGTGTAACGGGGAGCGAGTTCTTGAGGTTGTGTACGGGGGCAGTACCTGGGACCCGCGATTATGATAAGCAGCATTGTAAGGATCTTCAGCTTTTGCCTCCGCAGGTAGAAAATCCTATCTATGGGTGGTAA

Network for GWHGAAZE003828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13692.7	Glyco_trans_1_4	554	683	9.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09480	DGD	Metabolic pathways	map01100
K09480	DGD	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.218
	SRR3591706	second leaf	38.572
	SRR3591707	mature leaf	159.044
	SRR3591708	Shoot apex	30.172
	SRR3591709	Stem	67.435
	SRR3591710	White floral bud	31.687
	SRR3591711	White flower	44.425
	SRR3591712	Green floral bud	28.099
	SRR3591713	Yellow flower	38.382
SRP173429	SRR8316895	Juvenile bud stage	25.309
	SRR8316896	Juvenile bud stage	47.059
	SRR8316897	Juvenile bud stage	18.747
	SRR8316894	Third green stage	15.582
	SRR8316900	Third green stage	36.117
	SRR8316901	Third green stage	33.825
	SRR8316898	Complete white stage	16.983
	SRR8316899	Complete white stage	58.379
	SRR8316903	Complete white stage	30.036
	SRR8316902	Silver flowering stage	21.152
	SRR8316904	Silver flowering stage	30.618
	SRR8316905	Silver flowering stage	12.800
	SRR8316906	Gold flowering stage	48.651
	SRR8316907	Gold flowering stage	40.426
	SRR8316908	Gold flowering stage	45.094
SRP132670	SRR6706286	Control	35.914
	SRR6706287	Light intensity 50%	35.179
	SRR6706288	Light intensity 20%	34.206
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.082
	CNS0095593	Slightly white alabastrum(diploid) 2	24.559
	CNS0095594	Slightly white alabastrum(diploid) 3	23.233
	CNS0095595	Whole white alabastrum(diploid) 2	19.365
	CNS0095596	Whole white alabastrum(diploid) 3	16.846
	CNS0095597	Whole white alabastrum(diploid) 4	17.414
	CNS0095598	Silvery flower (diploied) 1	25.656
	CNS0095599	Silvery flower (diploied) 2	29.169
	CNS0095600	Silvery flower (diploied) 3	44.306
	CNS0095601	Golden flower (diploid) 1	34.136
	CNS0095602	Golden flower (diploid) 2	52.034
	CNS0095603	Golden flower (diploid) 3	54.770
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.873
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.580
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.467
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.667
	CNS0095610	Silvery flower (tetraploid) 1	47.471
	CNS0095611	Silvery flower (tetraploid) 2	44.328
	CNS0095612	Silvery flower (tetraploid) 3	34.750
	CNS0095613	Golden flower (tetraploid) 1	26.469
	CNS0095614	Golden flower (tetraploid) 2	45.431
	CNS0095615	Golden flower (tetraploid) 3	40.983
CRA001975	CRR073297	Stem 1	39.865
	CRR073298	Stem 2	36.402
	CRR073299	Stem 3	38.751
	CRR073300	Leaf 1	47.115
	CRR073301	Leaf 2	40.160
	CRR073302	Leaf 3	33.296
	CRR073303	Juvenile bud 1	42.087
	CRR073304	Juvenile bud 2	34.660
	CRR073305	Juvenile bud 3	55.555
	CRR073306	Third green 1	30.722
	CRR073307	Third green 2	25.335
	CRR073308	Third green 3	29.038
	CRR073309	Second white 1	30.273
	CRR073310	Second white 2	31.272
	CRR073311	Second white 3	32.115
	CRR073312	Silver flowering 1	34.703
	CRR073313	Silver flowering 2	41.698
	CRR073314	Silver flowering 3	35.924
	CRR073315	Gold flowering 1	20.305
	CRR073316	Gold flowering 2	32.589
	CRR073317	Gold flowering 3	27.044
	CRR073318	Tawny withering 1	27.389
	CRR073319	Tawny withering 2	29.488
	CRR073320	Tawny withering 3	24.592