Gene detail

Detail information of GWHGAAZE003860

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009770900.1	0	PREDICTED: sucrose-phosphatase 2 isoform X1 [Nicotiana sylvestris]
COG	YP_001517199.1	3E-59	sucrose phosphatase
Swissprot	tr\|Q5IH13\|SPP2_TOBAC	0	Sucrose-phosphatase 2
trEMBL	tr\|A7IZK6\|A7IZK6_COFCA	0	Sucrose phosphatase {ECO:0000313\|EMBL:ABI17892.1}
TAIR10	AT2G35840.3	2E-153	Sucrose-6F-phosphate phosphohydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	105909850	105912634	-
GWHAAZE00000001	mRNA	105909850	105912634	-
GWHAAZE00000001	exon	105909850	105910035	-
GWHAAZE00000001	exon	105910514	105910699	-
GWHAAZE00000001	exon	105910868	105911155	-
GWHAAZE00000001	exon	105911268	105911462	-
GWHAAZE00000001	exon	105911645	105911746	-
GWHAAZE00000001	exon	105912205	105912504	-
GWHAAZE00000001	exon	105912575	105912634	-
GWHAAZE00000001	CDS	105912575	105912634	-
GWHAAZE00000001	CDS	105912205	105912504	-
GWHAAZE00000001	CDS	105911645	105911746	-
GWHAAZE00000001	CDS	105911268	105911462	-
GWHAAZE00000001	CDS	105910868	105911155	-
GWHAAZE00000001	CDS	105910514	105910699	-
GWHAAZE00000001	CDS	105909850	105910035	-

Transcript Sequence
>GWHTAAZE003866 ATGAATCGGCTCACAAACTCGGCGCGGCTTATGATAGTTTCAGATCTAGACCATACAATGGTTGATCATCATGATCCGGAGAACCTCTCTCTACTAAGGTTTAATGCATTATGGGAAGCGAAGTATCGTCATGATTCTCTGCTAGTGTTCTCAACTGGAAGGTCACCTACACTGTACAAGGAATTGAGGAAAGAGAAGCCCATGTTAACCCCAGATATAACCATAATGTCTGTTGGAACTGAGATAACCTATGGAAATTCAATGGTGCCAGATGATGGTTGGGTTGCTGTTTTAAATCAGAAATGGGATAAGAACATAGTTAAAGAGGAAGCAAGCAAATTTCCTGAACTTAAGCTTCAGTCAGAAACTGAGCAACGACCACACAAGGTTAGCTTCTATGTTGAGAAAAGCAAGGCTGAAGAAGTAATGAAGTCTCTTTCTGGGTGTTTAGAAAAATGTGGTTTGGATGTTAAAATAATATATAGCGGTGGGATGGACTTGGATATATTGCCTCAAGGTGCTGGAAAAGGGCAAGCTCTTGCTTATTTGCTTAAAAAGTTGAAGACTGAGGGAAAATTACCAAATAACACTCTCGCTTGTGGCGACTCTGGAAATGATGCTGAACTATTCAGCATTCCAGATGTATATGGTGTCATGGTTAGTAATGCCCAAGAAGAATTGTTGAAGTGGTATAATGCAAATGCTAAAAATAACGCTAAAATTATTCATGCGACTGAGAGATGTGCAGCGGGCATTATTCAAGCCATTGGTCATTTTAACCTAGGTCCAAATACATCCCCTAGAGATATGAATCTCGCTGAAGCTAAGTCAGAGGAGTTTGATCCTGCCTACGAAGTAGTGAAATTTTACTTGTTTTTCGAGAGGTGGAGGCGTGCAGAAGTTGAGAACTCTGAGCTTTTCTTGGAAAATCTGAAAGCAGTTTGTCTGCTGTGGACACCCCATTATGCAAGCCCTTACGGGCCAGACCCATTCAGGCATAAGGATGGAGATCGTGGACTCCCTAGGACACGAGAAAAACCTGAAGGGCTCAAAATGCATACAAACAGGTCCACAAAGGAAGAAACTGGGCCGAGGTCACATGGTGCGATATACCCCTTCGGTCAAATCAGTTGTCCGTCTGGTGTTTTCATCCATCCATCTGGTGTTGAGAAATCACTTCATGAATGCATAGATGCATTCAGAAAATGCTATGGAGACAAACAAGGGAAACAATACCGTGTTTGGGTGGACCAGGTTATACAATCACAGATGGGTTCAGGCACGTGGCTGGTGAAGTTCAAGAAATTGGAGCTATCG

Network for GWHGAAZE003860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05116.14	S6PP	9	261	1.10E-100
PF08472.11	S6PP_C	262	315	9.90E-17
PF08472.11	S6PP_C	373	438	5.60E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07024	SPP	Biosynthesis of secondary metabolites	map01110
K07024	SPP	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005986	biological_process	sucrose biosynthetic process
GO:0050307	molecular_function	sucrose-phosphate phosphatase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.048
	SRR3591706	second leaf	49.223
	SRR3591707	mature leaf	56.252
	SRR3591708	Shoot apex	25.226
	SRR3591709	Stem	56.369
	SRR3591710	White floral bud	101.091
	SRR3591711	White flower	142.594
	SRR3591712	Green floral bud	79.913
	SRR3591713	Yellow flower	150.743
SRP173429	SRR8316895	Juvenile bud stage	47.743
	SRR8316896	Juvenile bud stage	76.386
	SRR8316897	Juvenile bud stage	35.378
	SRR8316894	Third green stage	34.680
	SRR8316900	Third green stage	110.377
	SRR8316901	Third green stage	101.666
	SRR8316898	Complete white stage	65.931
	SRR8316899	Complete white stage	119.784
	SRR8316903	Complete white stage	87.951
	SRR8316902	Silver flowering stage	75.560
	SRR8316904	Silver flowering stage	99.260
	SRR8316905	Silver flowering stage	46.962
	SRR8316906	Gold flowering stage	134.139
	SRR8316907	Gold flowering stage	147.648
	SRR8316908	Gold flowering stage	148.270
SRP132670	SRR6706286	Control	52.837
	SRR6706287	Light intensity 50%	52.529
	SRR6706288	Light intensity 20%	52.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.286
	CNS0095593	Slightly white alabastrum(diploid) 2	41.438
	CNS0095594	Slightly white alabastrum(diploid) 3	49.195
	CNS0095595	Whole white alabastrum(diploid) 2	46.835
	CNS0095596	Whole white alabastrum(diploid) 3	49.767
	CNS0095597	Whole white alabastrum(diploid) 4	44.714
	CNS0095598	Silvery flower (diploied) 1	43.711
	CNS0095599	Silvery flower (diploied) 2	48.089
	CNS0095600	Silvery flower (diploied) 3	123.606
	CNS0095601	Golden flower (diploid) 1	43.379
	CNS0095602	Golden flower (diploid) 2	87.354
	CNS0095603	Golden flower (diploid) 3	88.290
	CNS0095604	Slightly white alabastrum(tetraploid) 1	58.850
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.035
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.719
	CNS0095609	Whole white alabastrum(tetraploid) 3	100.903
	CNS0095610	Silvery flower (tetraploid) 1	159.258
	CNS0095611	Silvery flower (tetraploid) 2	128.048
	CNS0095612	Silvery flower (tetraploid) 3	155.651
	CNS0095613	Golden flower (tetraploid) 1	78.319
	CNS0095614	Golden flower (tetraploid) 2	100.691
	CNS0095615	Golden flower (tetraploid) 3	98.120
CRA001975	CRR073297	Stem 1	35.563
	CRR073298	Stem 2	31.340
	CRR073299	Stem 3	32.897
	CRR073300	Leaf 1	39.739
	CRR073301	Leaf 2	33.288
	CRR073302	Leaf 3	32.880
	CRR073303	Juvenile bud 1	44.831
	CRR073304	Juvenile bud 2	46.433
	CRR073305	Juvenile bud 3	31.621
	CRR073306	Third green 1	41.219
	CRR073307	Third green 2	37.830
	CRR073308	Third green 3	36.827
	CRR073309	Second white 1	69.470
	CRR073310	Second white 2	62.317
	CRR073311	Second white 3	53.205
	CRR073312	Silver flowering 1	38.631
	CRR073313	Silver flowering 2	29.420
	CRR073314	Silver flowering 3	32.829
	CRR073315	Gold flowering 1	49.851
	CRR073316	Gold flowering 2	51.891
	CRR073317	Gold flowering 3	33.867
	CRR073318	Tawny withering 1	21.067
	CRR073319	Tawny withering 2	29.018
	CRR073320	Tawny withering 3	22.493