Gene detail

Detail information of GWHGAAZE003861

Functional Annotation

Database	Orthologs	Annotation
Nr	BAE79546.1	carotenoid isomerase [Chrysanthemum x morifolium]
COG	YP_007132658.1	carotene isomerase
Swissprot	tr\|Q2VEX9\|CRTSO_DAUCA	Prolycopene isomerase, chloroplastic (Precursor)
trEMBL	tr\|Q2HXK3\|Q2HXK3_CHRMO	Carotenoid isomerase {ECO:0000313\|EMBL:BAE79546.1}
TAIR10	AT1G06820.1	carotenoid isomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	105932099	105947433	+
GWHAAZE00000001	mRNA	105932099	105947433	+
GWHAAZE00000001	exon	105932099	105932563	+
GWHAAZE00000001	exon	105933621	105933827	+
GWHAAZE00000001	exon	105934318	105934417	+
GWHAAZE00000001	exon	105937148	105937275	+
GWHAAZE00000001	exon	105937390	105937446	+
GWHAAZE00000001	exon	105937526	105937678	+
GWHAAZE00000001	exon	105937748	105937826	+
GWHAAZE00000001	exon	105942328	105942476	+
GWHAAZE00000001	exon	105942572	105942706	+
GWHAAZE00000001	exon	105942834	105942947	+
GWHAAZE00000001	exon	105945768	105945878	+
GWHAAZE00000001	exon	105946271	105946416	+
GWHAAZE00000001	exon	105947427	105947433	+
GWHAAZE00000001	CDS	105932099	105932563	+
GWHAAZE00000001	CDS	105933621	105933827	+
GWHAAZE00000001	CDS	105934318	105934417	+
GWHAAZE00000001	CDS	105937148	105937275	+
GWHAAZE00000001	CDS	105937390	105937446	+
GWHAAZE00000001	CDS	105937526	105937678	+
GWHAAZE00000001	CDS	105937748	105937826	+
GWHAAZE00000001	CDS	105942328	105942476	+
GWHAAZE00000001	CDS	105942572	105942706	+
GWHAAZE00000001	CDS	105942834	105942947	+
GWHAAZE00000001	CDS	105945768	105945878	+
GWHAAZE00000001	CDS	105946271	105946416	+
GWHAAZE00000001	CDS	105947427	105947433	+

Transcript Sequence
>GWHTAAZE003867 ATGGTATTCTCTTATGCACCTACTACTACAACCTACAACTCCCAGTTCTTCTTCACTCACCCCCCAAAAAAACCACAATTGGGTACTACTCCCAACTCCCTAGATGTCAAATGTTCAAACAAGCCCACTACCTATTTCAAATTTGGGTTCTTCAATTTCAGACACAGAAGTGAAAAACACAAGATTTTGAGAGCTACCTCGAAATTAGGATTTAAGGGGGATGTAGAGAGAGTATTGGAGAGTGATGGTGGGTTTGCAGGAGTGGAAATTAAGAGCAATTACGATGCGATTGTAATTGGGTCGGGGATTGGTGGGTTGGTTGCGGCTACACAACTGGCTGTGAAAGGGGCTAGGGTTTTGGTTCTCGAAAAGTATGTGATTCCGGGTGGGAGCTCTGGTTTCTATCAGAGGGATGGCTATACATTTGATGTTGGATCTTCTGTCATGTTTGGTTTCAGTGACAAGGGCAATCTTAATTTGATAACTCAAGCATTGGCAGCCGTTGGATGTAAGATGGAGGTGATACCCGATCCATCCACTGTCCATTTTCATCTACCAAATAACCTTTCTGTTCGAGTACACAGAGAATACAGTGAATTCATTGCAGAACTTACAAGTAAATTTCCCCATGAGAAGGAAGGGATCCTCAAATTCTACAGCAAATGTTGGAAGATTTTCAATGCCTTGAACTCATTGGAATTGAAGTCACTTGAGGAGCCAATCTACCTTTTTGGACAGTTTTTCAAGAAACCTATCGAATGCTCGACACTTGTCCTTTGTTTCGGTCTATCTTATTTGCCATTACTATCCATTGCAGCTTATTATCTGCCCCAAAATGCTGGTGACATAGCTCGGAAATTCATAAAAGATCCCGAGGTGTTGTCCTTCATAGATGCTGAGTGTTTTATTGTGAGCACGGTTAATGCATTACAGACACCAATGATAAATGCAAGCATGGTTCTATGTGACAGACATTTTGGTGGAATTAACTACCCTGTTGGTGGGGTTGGAGGAATTGCAAAGTCTTTAGCAAAAGGATTGGTTGATCAGGGCAGTGAAATACTTTACAAAGCAAATGTCACCAGCATCATAATCAACCAAGGAAAAGCTGTTGGAGTGAAGCTGTCAGATGGACGGGAGTTGTTTGCCAAAACCATAATATCAAATGCTACCAGATGGGATACCTTTGGCAAGCTTTTGAAAAAGGAAGATCTACCCAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTAAAGGCACCCTCTTTTCTTTCAATTCACATGGGGGTTAAGGCTGAGATTTTGCCACCAGATACAGATTGCCACCATTTTGTCCTTGAGGATGATTGGACAAATTTAGAAGCGCCATATGGAAGCATATTTCTCAGCATTCCAACTATTCTCGATTCATCATTGGCTCCTGAAGGACATCATATTCTCCATATATTTACAACTTCTTCCATAGAGGACTGGCAGGGGCTCTCTCAAAAGGACTATGAGGCAAAGAAGGAACTTGTGGCAGATAAAATAATAAGCAGATTGGAAAATAAGCTATTTCCAGGTCTCAAGTCTTCTGTTGTTTTCAAGGAGGTTGGGACACCAAAGACGCACAGGCGGTACCTGGCTCGTGATAGTGGTACATATGGGCCAATGCCCCGCAGTACTCCAAAGGGCTTATTGGGAATGCCATTCAACACGACTGCTGTAGATGGTCTATACTGTGTGGGGGATAGTTGCTTTCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGTGCTCATCGGGTAGCTGCTGATGTTGGTAAGCCTGTTTTTATGGGCCATTCCCTCAATTTTCAGGCTTGA

Network for GWHGAAZE003861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	103	598	9.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09835	crtISO, crtH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016117	biological_process	carotenoid biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0046608	molecular_function	carotenoid isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.073
	SRR3591706	second leaf	20.322
	SRR3591707	mature leaf	20.976
	SRR3591708	Shoot apex	16.439
	SRR3591709	Stem	10.702
	SRR3591710	White floral bud	20.255
	SRR3591711	White flower	18.928
	SRR3591712	Green floral bud	29.480
	SRR3591713	Yellow flower	15.892
SRP173429	SRR8316895	Juvenile bud stage	17.266
	SRR8316896	Juvenile bud stage	25.527
	SRR8316897	Juvenile bud stage	14.419
	SRR8316894	Third green stage	13.126
	SRR8316900	Third green stage	42.764
	SRR8316901	Third green stage	33.713
	SRR8316898	Complete white stage	10.625
	SRR8316899	Complete white stage	51.941
	SRR8316903	Complete white stage	15.703
	SRR8316902	Silver flowering stage	3.593
	SRR8316904	Silver flowering stage	7.652
	SRR8316905	Silver flowering stage	3.366
	SRR8316906	Gold flowering stage	9.900
	SRR8316907	Gold flowering stage	7.702
	SRR8316908	Gold flowering stage	12.489
SRP132670	SRR6706286	Control	19.240
	SRR6706287	Light intensity 50%	20.666
	SRR6706288	Light intensity 20%	23.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.353
	CNS0095593	Slightly white alabastrum(diploid) 2	15.295
	CNS0095594	Slightly white alabastrum(diploid) 3	11.146
	CNS0095595	Whole white alabastrum(diploid) 2	17.899
	CNS0095596	Whole white alabastrum(diploid) 3	14.760
	CNS0095597	Whole white alabastrum(diploid) 4	14.468
	CNS0095598	Silvery flower (diploied) 1	14.990
	CNS0095599	Silvery flower (diploied) 2	14.423
	CNS0095600	Silvery flower (diploied) 3	25.091
	CNS0095601	Golden flower (diploid) 1	15.184
	CNS0095602	Golden flower (diploid) 2	19.046
	CNS0095603	Golden flower (diploid) 3	19.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.753
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.219
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.007
	CNS0095610	Silvery flower (tetraploid) 1	36.959
	CNS0095611	Silvery flower (tetraploid) 2	44.587
	CNS0095612	Silvery flower (tetraploid) 3	27.805
	CNS0095613	Golden flower (tetraploid) 1	9.388
	CNS0095614	Golden flower (tetraploid) 2	18.327
	CNS0095615	Golden flower (tetraploid) 3	8.846
CRA001975	CRR073297	Stem 1	14.563
	CRR073298	Stem 2	13.743
	CRR073299	Stem 3	11.048
	CRR073300	Leaf 1	23.479
	CRR073301	Leaf 2	19.748
	CRR073302	Leaf 3	14.033
	CRR073303	Juvenile bud 1	19.263
	CRR073304	Juvenile bud 2	13.778
	CRR073305	Juvenile bud 3	20.643
	CRR073306	Third green 1	2.861
	CRR073307	Third green 2	1.198
	CRR073308	Third green 3	1.485
	CRR073309	Second white 1	2.292
	CRR073310	Second white 2	5.615
	CRR073311	Second white 3	3.083
	CRR073312	Silver flowering 1	2.148
	CRR073313	Silver flowering 2	1.534
	CRR073314	Silver flowering 3	1.453
	CRR073315	Gold flowering 1	6.140
	CRR073316	Gold flowering 2	11.247
	CRR073317	Gold flowering 3	3.857
	CRR073318	Tawny withering 1	3.173
	CRR073319	Tawny withering 2	3.108
	CRR073320	Tawny withering 3	3.225