Gene detail

Detail information of GWHGAAZE003869

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269129.1	0	PREDICTED: F-box protein At5g06550 [Vitis vinifera]
COG	YP_005368693.1	9E-13	hypothetical protein COCOR_02715
Swissprot	tr\|Q67XX3\|FB252_ARATH	0	F-box protein At5g06550
trEMBL	tr\|A5BXV5\|A5BXV5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN75104.1}
TAIR10	AT5G06550.1	0	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106171964	106185608	-
GWHAAZE00000001	mRNA	106171964	106185608	-
GWHAAZE00000001	exon	106184244	106185608	-
GWHAAZE00000001	exon	106182799	106182866	-
GWHAAZE00000001	exon	106182074	106182120	-
GWHAAZE00000001	exon	106176023	106177193	-
GWHAAZE00000001	exon	106171964	106172207	-
GWHAAZE00000001	CDS	106184244	106185608	-
GWHAAZE00000001	CDS	106182799	106182866	-
GWHAAZE00000001	CDS	106182074	106182120	-
GWHAAZE00000001	CDS	106176023	106177193	-
GWHAAZE00000001	CDS	106171964	106172207	-

Transcript Sequence
>GWHTAAZE003875 ATGGTTAGCAACCAGCAAAAAGCCATTGATGATCTTTTGCTTGAATTGGACGAGGAGCGAAATGCGTCCTCCTCGGCTGCGAACGAGGCCATGTCTATGATTCTGAGGTTGCAGAGGGAAAAAGCGGAGATTCAGATGGAAGCACGCCAATTCAAGCGCTTTGTTGAGGAGAAAATGGCTCATGACCAAGAAGAGCTTTTTGCCATGGAGGACGTTTTGTATAAGAGAGAACAATCGATTCAGTCCCTCACTTGTGAGGTGCAGGCATATAAGCATAGGATGATGAGTTACGGTCTCTCCGAAGCTGAGGCAGAGGGGGCTATTATGACCCGTAATAACAGCGGGGTAGAAACTATGTCCCAAAATAACAACTTTATTGGTAACATTCCAAATAGCAGCTTTGTTGGCAATATAACCTGCGCTAACGACGTGGCTGAAAACATGACCCGCAATAACAGCATGGGGGGTAACACAATGTCGAGGAATAATAGCGGGGTCAGAAACATGACCAGCAATAACAGCATGGTCGAAAATCTTGATGTTTTGTATGAATTCCCCACCCATGAATACCCCCCTCTCAAGTGCAATCTCAACGAGAACCAAGCCTATATGGAGGAGCCTGACAATGAGACGGTTGATATTGAGAAATACGCTTTCGGTGAGACTCCACAATCTCGGGACCATCTTAAGGATTTGGAATACAGGATCAATCAATTGGAAAGTACACCTAGCGAGAATCAATCCGACAGGGGTGATGTTTTTGGCACGAAGAACGTGCTCGAAAAAGTGATTGTTGGTCATTCTCCAAGGCAGAGGCCTAAACATTTTAGGGGGATTTCGACTGAGAGTACAAGTTCGTTCTTCGCAACCATTAAAGAGACGGGTTCAGATGGCACCTCAGAATCTCCAAAAGTTGTTGGCACTGCTAAGAAGATGGATTCTGTCCATATGGATGACTACTCTCATCTGAGGAAGGTTGATGATGCATCCGAAATTGGCGATGATATGAGTGATAGAGTATATACCATCGATTCGGTTCATACTGGGGTACCCTATCATGGTGTTAATGAGCCCAAGGCTTCTATGGGGGTATCTGAAGATTATGTGTCTACTCCGAGGGGATCGTTGATTCGGGAAGATATAGGGGATCCAGAGATTAAGAAGCTGTACACAAGGCTCCAGGCTCTTGAGGCTGACAGAGAATCGATGAGGCAGGCACTCATTTCTATGCGCACTGACAAGGCACAATTGGTATTGTTGAAGGAGATTGCTCAACACCTTTGTAAAGAAATGTCTCCCACAAGAAATTTGCCAGTGAAGAAGGCATCTATCACTAGGGTCTTTTCCTTCTTCTCAGTATTCAAGGCCCGCAAAGCAAGCAAAACAACTAAGAAACATCCAAAGCTAAAAGAGGATACAGACCAGCCAGATGGTGGATTCTATCTTTTCTTTTCTGGAGAAAGAGAGCACGTCGAAGCAAAAATTGTACCAAAATCACACCCAATTGATGAAGATGTAGAAGAAGAAGGTTTCAGTTTGAAAACCTCAGCTTATGGGGTCCAACCATTGGGTAATTTATACTTCAGCTCATCTTCACACAATTCACGAAACACAGGCCTGGGTAATCTCCAAACCCTAACTGATGAGCTTGTTCTTGAAATTCTAGGGTTTTTGGGTGGTTCTCATTTGGGTGTTTTGTCCACTGTTAGCAAATCCTTCTATGTTTTCTCTAACCATGAACCCCTTTGGAGGAATCTTGTTTTAGAAAATTACGACGGCGGGTTTTCGTATAACGGGTCATGGAGATCCACTTACATTGCTGCATTCAACCCTTCATTTTCCGTTGTCTCGAGTACCGGGTGTTTGAAGGTTGGGGATTTTTTTTCTGACTATTTGTTTCAGAGCTGGCTTTGTGCAAATCTTGAAATGAAAGCCGAGTGGCTTGAAAGGGATAACATACAGCGAAGAAAGGGCATTTCTATTGACGAATTCGTGTCGGAATTTGAGGAACTGAATAAGCCTGTGTTGTTGGAAGGGTGTTTGGATAATTGGGTTGCGATCGAAAAATGGGATAGGGATTATTTGGTTGAGGTATGTAAGGGAGTTCAATTTTCGGTTGGGCCAGTGGAGATACATCTTGAGGACTTCTTTAACTATTCTGATCAAGCAAGGGAAGAAAGACCATTGTATCTTTTCGACCCAAAGTTTGCAGAGAAAGTTCCGAGGTTGGGTTCAGATTATGAAGTTCCGGTCTACTTTAATGAGGATTTGTTTGGTGTTTTGGGGAATGAAAGGCCAGATTATAGATGGATTATCATTGGACCGGCCGGTTCTGGTTCGTCATTCCACATTGATCCGAATTCCACTTCTGCTTGGAATGCAGTGATAAGGGGTTCTAAGAAATGGGTGTTGTTCCCGCCTGACATTGTGCCACCTGGCGTGCATCCAAGCCCGGACGGTGCTGAGGTGGCGTGCCCTGTGTCAATAATCGAGTGGTTCATGAACTTTTACAGCGCTACAAAGAAGTGGAAAAAGAAACCCATTGAGTGTGTTTGTAAGGCTGGGGAAGTGATCTTTGTGCCTAATGGATGGTGGCATTTGGTTATTAATCTTGAAGATTCCATTGCCATTACTCAGAATTTTGTTAGCAGGAGGAATTTGTTGAATGTACTGGATTTCTTGAAGAGGCCGAATGCAGGCGAGCTTGTGTCGGGAACAAGAGACCGCATTAATTTATACGACAAGTTCAAGAGCGCGATAGAGAAGACTTACCCAGGTACCATTGAACAACTGGTGTTGAAGGCAGAGGAGCAAAAGGCCCAGCAGAAGAAGAAAATTTCCTTCTGGGAATCAGCAACAGATTCTAACGTGGGCGCATTCAAATTCTCTTTCTAA

Network for GWHGAAZE003869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04576.16	Zein-binding	1	87	4.60E-33
PF13621.7	Cupin_8	663	881	1.60E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.236
	SRR3591706	second leaf	9.411
	SRR3591707	mature leaf	12.510
	SRR3591708	Shoot apex	14.057
	SRR3591709	Stem	14.817
	SRR3591710	White floral bud	65.109
	SRR3591711	White flower	17.976
	SRR3591712	Green floral bud	37.186
	SRR3591713	Yellow flower	17.898
SRP173429	SRR8316895	Juvenile bud stage	10.433
	SRR8316896	Juvenile bud stage	14.790
	SRR8316897	Juvenile bud stage	5.733
	SRR8316894	Third green stage	6.003
	SRR8316900	Third green stage	26.610
	SRR8316901	Third green stage	22.172
	SRR8316898	Complete white stage	8.330
	SRR8316899	Complete white stage	22.913
	SRR8316903	Complete white stage	12.811
	SRR8316902	Silver flowering stage	10.443
	SRR8316904	Silver flowering stage	13.860
	SRR8316905	Silver flowering stage	6.595
	SRR8316906	Gold flowering stage	23.587
	SRR8316907	Gold flowering stage	23.153
	SRR8316908	Gold flowering stage	22.388
SRP132670	SRR6706286	Control	23.259
	SRR6706287	Light intensity 50%	23.596
	SRR6706288	Light intensity 20%	23.885
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.160
	CNS0095593	Slightly white alabastrum(diploid) 2	11.809
	CNS0095594	Slightly white alabastrum(diploid) 3	10.843
	CNS0095595	Whole white alabastrum(diploid) 2	35.476
	CNS0095596	Whole white alabastrum(diploid) 3	34.332
	CNS0095597	Whole white alabastrum(diploid) 4	55.829
	CNS0095598	Silvery flower (diploied) 1	15.635
	CNS0095599	Silvery flower (diploied) 2	19.780
	CNS0095600	Silvery flower (diploied) 3	21.723
	CNS0095601	Golden flower (diploid) 1	15.712
	CNS0095602	Golden flower (diploid) 2	21.462
	CNS0095603	Golden flower (diploid) 3	20.187
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.777
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.495
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.451
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.874
	CNS0095608	Whole white alabastrum(tetraploid) 2	82.301
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.405
	CNS0095610	Silvery flower (tetraploid) 1	16.681
	CNS0095611	Silvery flower (tetraploid) 2	21.794
	CNS0095612	Silvery flower (tetraploid) 3	34.238
	CNS0095613	Golden flower (tetraploid) 1	14.068
	CNS0095614	Golden flower (tetraploid) 2	17.225
	CNS0095615	Golden flower (tetraploid) 3	28.952
CRA001975	CRR073297	Stem 1	16.642
	CRR073298	Stem 2	16.976
	CRR073299	Stem 3	13.627
	CRR073300	Leaf 1	33.887
	CRR073301	Leaf 2	22.243
	CRR073302	Leaf 3	16.478
	CRR073303	Juvenile bud 1	33.740
	CRR073304	Juvenile bud 2	24.876
	CRR073305	Juvenile bud 3	21.236
	CRR073306	Third green 1	25.160
	CRR073307	Third green 2	26.368
	CRR073308	Third green 3	25.023
	CRR073309	Second white 1	15.215
	CRR073310	Second white 2	18.336
	CRR073311	Second white 3	16.917
	CRR073312	Silver flowering 1	32.376
	CRR073313	Silver flowering 2	28.441
	CRR073314	Silver flowering 3	22.840
	CRR073315	Gold flowering 1	23.561
	CRR073316	Gold flowering 2	14.036
	CRR073317	Gold flowering 3	15.086
	CRR073318	Tawny withering 1	26.515
	CRR073319	Tawny withering 2	23.664
	CRR073320	Tawny withering 3	24.664