Gene detail

Detail information of GWHGAAZE003872

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGK62447.1	0	cycloartenol synthase [Panax quinquefolius]
COG	YP_004346025.1	4E-171	squalene/oxidosqualene cyclase
Swissprot	tr\|O82139\|CAS1_PANGI	0	Cycloartenol Synthase
trEMBL	tr\|N0BJF5\|N0BJF5_PANQU	0	Cycloartenol synthase {ECO:0000313\|EMBL:AGK62447.1}
TAIR10	AT2G07050.1	0	cycloartenol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106257842	106282600	+
GWHAAZE00000001	mRNA	106257842	106282600	+
GWHAAZE00000001	exon	106257842	106257896	+
GWHAAZE00000001	exon	106258038	106258257	+
GWHAAZE00000001	exon	106261162	106261347	+
GWHAAZE00000001	exon	106261826	106262020	+
GWHAAZE00000001	exon	106262117	106262224	+
GWHAAZE00000001	exon	106264002	106264190	+
GWHAAZE00000001	exon	106264652	106264765	+
GWHAAZE00000001	exon	106264938	106265060	+
GWHAAZE00000001	exon	106265536	106265658	+
GWHAAZE00000001	exon	106265737	106265835	+
GWHAAZE00000001	exon	106266490	106266546	+
GWHAAZE00000001	exon	106269737	106269783	+
GWHAAZE00000001	exon	106269873	106270016	+
GWHAAZE00000001	exon	106270606	106270783	+
GWHAAZE00000001	exon	106276632	106276712	+
GWHAAZE00000001	exon	106281245	106281328	+
GWHAAZE00000001	exon	106282481	106282600	+
GWHAAZE00000001	five_prime_UTR	106257842	106257896	+
GWHAAZE00000001	five_prime_UTR	106258038	106258110	+
GWHAAZE00000001	CDS	106258111	106258257	+
GWHAAZE00000001	CDS	106261162	106261347	+
GWHAAZE00000001	CDS	106261826	106262020	+
GWHAAZE00000001	CDS	106262117	106262224	+
GWHAAZE00000001	CDS	106264002	106264190	+
GWHAAZE00000001	CDS	106264652	106264765	+
GWHAAZE00000001	CDS	106264938	106265060	+
GWHAAZE00000001	CDS	106265536	106265658	+
GWHAAZE00000001	CDS	106265737	106265835	+
GWHAAZE00000001	CDS	106266490	106266546	+
GWHAAZE00000001	CDS	106269737	106269783	+
GWHAAZE00000001	CDS	106269873	106270016	+
GWHAAZE00000001	CDS	106270606	106270783	+
GWHAAZE00000001	CDS	106276632	106276712	+
GWHAAZE00000001	CDS	106281245	106281328	+
GWHAAZE00000001	CDS	106282481	106282600	+

Transcript Sequence
>GWHTAAZE003878 GATTATTCAACACAGTTGATTATTCAACACCGAATCCAGCTAAATTTTGAATTATAGTAGACAAGGTACAATTACAATGTGGAAGCTTAAGTTCTCAGAGGGAGGGAGTCCATGGCTTCGGAGTGTCAATGATCACGTCGGTAGGCAAATTTGGGAGTTCGATCCTACTCTCGGATCCCCCCGAGGAACTGGCCGAGATCGATAATGCTCGCCAGAATTTTCACGCCCATCGCTTCGAGAAAAAGCACAGCTCAGATTTGCTTATGCGCATTCAGTTTTCTAAGGAGAATCCTGGTCATATAATCTTACCCCAAGTCAAGGTCAAAGATACTGAAGATATTACAGAGGATAAAGTGACAGACACGTTAAAAAGAGCTATCAATTACCATTCCACTATCCAGGCTCATGATGGACATTGGGGAGGAGATTATGGAGGTCCTATGTTTCTAATGCCGGGTTTGAACAAAGATGGTGGATGGGGTTTACACATTGAGGGTCCAAGCACAATGTTTGGTACTGCCTTGAACTATGTTACCATGAGGTTGCTTGGCGAAGGACCAAATGATGGACAGGGGGCAATGGAGAAAGGGCGTAAATGGATTCTGGACCATGGTGGTGCCACTTATATAACATCATGGGGAAAAATGTGGCTTTCGGTACTTGGGGTGTTTGAATGGTCTGGCAATAACCCCTTGCCCCCTGAGATATGGCTTTTACCATATATTCTTCCATTCCATCCAGGTGACTGCCTATTTATACATTGTGAAGATCTGTATTACCCACACCCTCTCATACAGGACATTCTTTGGACATCTCTTCACAAAGCTGTGGAACCTATTGTAATGCGTTGGCCTGGAAAAAAGTTGAGAGAAAAGGCTCTTTCCACTGTGATGGAGCACATACATTACGAAGATGATAATACTCGCTATCTATGTATAGGACCTGTAAACAAGGTGTTAAATATGCTCTGCTGTTGGGCAGAAGATCCAAACTCAGAGGCTTTCAAGTTGCATCTCCCCAGAATCAATGACTATCTGTGGCTTGCTGAAGATGGCATGAAAATGCAGGGTTATAATGGAAGTCAATTATGGGACACTGCTTTTGCTACTCAAGCAATTATCTCTACGAATCTTGTAGAAGAATATGGTCCAACTCTGAGAAAAGCACACACTTACATGAAAAAATCACAGGTGTTGGAGGATTGCCCAGGCAATCTTGATTATTGGTATCGTCACATCTCAAAAGGTGCCTGGCCTTTCTCGACTGCAGATCACGGATGGCCAATTTCAGATTGCACTGCAGAAGGACTGAAGGCTGTTCTTCAGTTATCAAAGTTGCCATCAGAAATTGTTGGTGAACCATTGGATGCAAACCGGTTGTATGATGCTGTCAATGTTATTCTTTCTTTACAGAATAGTGATGGTGGCTTTGCAACATATGAACTCACAAGATCCTATAGCTGGTTGGAGTTAATCAATCCTGCAGAAACATTTGGTGACATTGTCATTGACTACCCTTATGTAGAATGTACTTCAGCTGCAATTCAAGCGTTGGAATCATTCAAAAAGCTATATCCTGGGCATCGGAGAGAAGAAATAAGATCCTGTATTGAAAAAGCCACTCTTTTCATTGAAAAGATTCAAGAAGCAGATGGCTCATGGTATGGATCTTGGGGTGTTTGCTTTACCTATGGTACATGGTTCGGGATTAAAGGCTTAGTAGCTGCTGGGAAGAACTTCTCTAATTCCCCTAGCATCCGCAAGGGTTGTGAGTTTCTATTGTCGAAACAACTTGCTTCGGGTGGGTGGGGAGAGAGTTACCTTTCATGTCAGAACAAGGTGTATACAAATCTTGAGGGCAACCGTTCTCATGTGGTAAATACTGGGTGGGCTATGCTAGCTCTTATTGATGCTGGGCAGGCCGACAGAGATGCAACACCACTGCACCGGGCAGCTAGATTATTGATTAATTCTCAAATGGAAAACGGAGATTTCCCGCAGGAGGAGATAATGGGGGTGTTCAACAAGAACTGCATGATCACATATGCTGCCTACAGAAACATTTTCCCTATTTGGGCTTTGGGAGAATATCTAAGCCAGGTATTGAAAGCAGAACTAAAATAA

Network for GWHGAAZE003872

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00432.22	Prenyltrans	81	104	1.5
PF13249.7	SQHop_cyclase_N	112	204	3.70E-21
PF13243.7	SQHop_cyclase_C	318	655	1.30E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01853	CAS1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0003824	molecular_function	catalytic activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0000250	molecular_function	lanosterol synthase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.739
	SRR3591706	second leaf	36.167
	SRR3591707	mature leaf	17.261
	SRR3591708	Shoot apex	42.344
	SRR3591709	Stem	51.255
	SRR3591710	White floral bud	14.603
	SRR3591711	White flower	72.454
	SRR3591712	Green floral bud	21.961
	SRR3591713	Yellow flower	255.337
SRP173429	SRR8316895	Juvenile bud stage	48.731
	SRR8316896	Juvenile bud stage	82.426
	SRR8316897	Juvenile bud stage	31.748
	SRR8316894	Third green stage	23.837
	SRR8316900	Third green stage	40.909
	SRR8316901	Third green stage	42.823
	SRR8316898	Complete white stage	6.883
	SRR8316899	Complete white stage	26.911
	SRR8316903	Complete white stage	10.301
	SRR8316902	Silver flowering stage	31.082
	SRR8316904	Silver flowering stage	50.343
	SRR8316905	Silver flowering stage	27.479
	SRR8316906	Gold flowering stage	139.353
	SRR8316907	Gold flowering stage	141.742
	SRR8316908	Gold flowering stage	115.554
SRP132670	SRR6706286	Control	29.299
	SRR6706287	Light intensity 50%	31.040
	SRR6706288	Light intensity 20%	32.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.328
	CNS0095593	Slightly white alabastrum(diploid) 2	24.456
	CNS0095594	Slightly white alabastrum(diploid) 3	30.188
	CNS0095595	Whole white alabastrum(diploid) 2	18.382
	CNS0095596	Whole white alabastrum(diploid) 3	20.018
	CNS0095597	Whole white alabastrum(diploid) 4	12.006
	CNS0095598	Silvery flower (diploied) 1	42.355
	CNS0095599	Silvery flower (diploied) 2	32.533
	CNS0095600	Silvery flower (diploied) 3	58.409
	CNS0095601	Golden flower (diploid) 1	44.003
	CNS0095602	Golden flower (diploid) 2	72.398
	CNS0095603	Golden flower (diploid) 3	70.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.597
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.863
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.061
	CNS0095610	Silvery flower (tetraploid) 1	46.387
	CNS0095611	Silvery flower (tetraploid) 2	33.223
	CNS0095612	Silvery flower (tetraploid) 3	57.232
	CNS0095613	Golden flower (tetraploid) 1	78.008
	CNS0095614	Golden flower (tetraploid) 2	49.073
	CNS0095615	Golden flower (tetraploid) 3	80.944
CRA001975	CRR073297	Stem 1	52.166
	CRR073298	Stem 2	42.129
	CRR073299	Stem 3	45.337
	CRR073300	Leaf 1	32.345
	CRR073301	Leaf 2	30.721
	CRR073302	Leaf 3	29.171
	CRR073303	Juvenile bud 1	17.987
	CRR073304	Juvenile bud 2	7.307
	CRR073305	Juvenile bud 3	18.076
	CRR073306	Third green 1	17.873
	CRR073307	Third green 2	18.562
	CRR073308	Third green 3	19.418
	CRR073309	Second white 1	68.490
	CRR073310	Second white 2	81.386
	CRR073311	Second white 3	64.733
	CRR073312	Silver flowering 1	72.700
	CRR073313	Silver flowering 2	59.832
	CRR073314	Silver flowering 3	60.793
	CRR073315	Gold flowering 1	10.428
	CRR073316	Gold flowering 2	11.592
	CRR073317	Gold flowering 3	8.763
	CRR073318	Tawny withering 1	25.104
	CRR073319	Tawny withering 2	13.733
	CRR073320	Tawny withering 3	19.644