Gene detail

Detail information of GWHGAAZE003883

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004238207.1	3.9538E-129	PREDICTED: plastidial lipoyltransferase 2 [Solanum lycopersicum]
COG	YP_007140689.1	5E-67	Octanoyltransferase
Swissprot	tr\|Q948J9\|LIP2P_ARATH	2E-117	Plastidial lipoyltransferase 2
trEMBL	tr\|D7TP86\|D7TP86_VITVI	3E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32309.3}
TAIR10	AT4G31050.1	9E-95	Biotin/lipoate A/B protein ligase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106457012	106459788	-
GWHAAZE00000001	mRNA	106457012	106459788	-
GWHAAZE00000001	exon	106459648	106459788	-
GWHAAZE00000001	exon	106458070	106458351	-
GWHAAZE00000001	exon	106457635	106457785	-
GWHAAZE00000001	exon	106457012	106457423	-
GWHAAZE00000001	CDS	106459648	106459788	-
GWHAAZE00000001	CDS	106458070	106458351	-
GWHAAZE00000001	CDS	106457635	106457785	-
GWHAAZE00000001	CDS	106457101	106457423	-
GWHAAZE00000001	three_prime_UTR	106457012	106457100	-

Transcript Sequence
>GWHTAAZE003889 ATGGGTTTTGGTGACACAGAATATCCTTGTTCTTCCTCTCCTCTACAATCACTTCGAGTTGTGGTTAGGACTAGGATTTCACATTCCCTTGCGATAAACCTGGCAATTGGCGGGCTGGACGGCCTTAAGCAGTTCCGGTGGGGACTAGTCTATTGCAGATGTGATTGTTTTGATATGTATAAAGATCTAGTTCCGTATGCTGAGGCATTGTCTTGGCAGAAATCCCTTGTTAAAGATAGGAAGGCCTTAATCGAACGGAATGAGGACACTTCCGACATGCTGATAGCTCTTCAACATCACCCTGTTTATACATTGGGAACTGGTAGTTCCGAAGAGTACTTGAATTTTAACATCAACAAAGCCCCTCATGACATCTATCGGACTGACCGCGGTGGTGAAGTTACGTATCACGGGCCTGGACAGCTAGTTATGTACCCTATCATCAATCTTCGTTATCACAAGATGGATCTTCACTGGTACCTCCGTGCACTTGAGGAGGTGATCATTCGTGCTCTTTACTCAACATTTTCTATCAAAGCTTCCCGGCTTGAGGGTTTAACCGGTGTTTGGGTTGGAGATCAGAAACTAGCAGCCATTGGGATAAAGGTGTCGCAGTGGATAACTCATCATGGTTTAGCACTGAATGTTACCACGGATCTTGCGCCCTTTCAAAGGATAGTTCCATGTGGGATAAGGGACCGTCGAGTTGGAAGCATAAAGGGTTTGCTGGGGGAACTTTTGTCCATCGATGATTGCCAACTGATTGATATCACCCACAAATCGCTGCTCAAAGAGTTTTGCGAAGTTTTCCAATTTGAACTCTGCTGCGTACCTATGCCTATATTGAATTTATCAGAGGGGAATCCGTCAATCATTGTTAATGAGGAATTAAATTAGCTGATATATTAAACATAACTTGTATTTTTTCTTTTTTCCCAGAGTGTATATATTGATGGGTGTACTGTATCTCCAATAAAGTGTTCTGC

Network for GWHGAAZE003883

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03099.20	BPL_LplA_LipB	123	219	8.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03801	lipB	Metabolic pathways	map01100
K03801	lipB	Lipoic acid metabolism	map00785

Gene Ontology

GO term	Ontology	Name
GO:0009249	biological_process	protein lipoylation
GO:0006464	biological_process	cellular protein modification process
GO:0033819	molecular_function	lipoyl(octanoyl) transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.511
	SRR3591706	second leaf	11.480
	SRR3591707	mature leaf	15.794
	SRR3591708	Shoot apex	20.821
	SRR3591709	Stem	33.163
	SRR3591710	White floral bud	18.562
	SRR3591711	White flower	30.019
	SRR3591712	Green floral bud	27.512
	SRR3591713	Yellow flower	25.958
SRP173429	SRR8316895	Juvenile bud stage	9.589
	SRR8316896	Juvenile bud stage	12.838
	SRR8316897	Juvenile bud stage	9.312
	SRR8316894	Third green stage	5.885
	SRR8316900	Third green stage	20.793
	SRR8316901	Third green stage	19.456
	SRR8316898	Complete white stage	10.797
	SRR8316899	Complete white stage	35.577
	SRR8316903	Complete white stage	14.081
	SRR8316902	Silver flowering stage	13.074
	SRR8316904	Silver flowering stage	14.987
	SRR8316905	Silver flowering stage	7.588
	SRR8316906	Gold flowering stage	28.423
	SRR8316907	Gold flowering stage	29.017
	SRR8316908	Gold flowering stage	21.522
SRP132670	SRR6706286	Control	18.321
	SRR6706287	Light intensity 50%	17.089
	SRR6706288	Light intensity 20%	21.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.135
	CNS0095593	Slightly white alabastrum(diploid) 2	21.452
	CNS0095594	Slightly white alabastrum(diploid) 3	19.645
	CNS0095595	Whole white alabastrum(diploid) 2	22.879
	CNS0095596	Whole white alabastrum(diploid) 3	19.953
	CNS0095597	Whole white alabastrum(diploid) 4	19.955
	CNS0095598	Silvery flower (diploied) 1	29.432
	CNS0095599	Silvery flower (diploied) 2	24.781
	CNS0095600	Silvery flower (diploied) 3	37.247
	CNS0095601	Golden flower (diploid) 1	34.550
	CNS0095602	Golden flower (diploid) 2	32.876
	CNS0095603	Golden flower (diploid) 3	35.367
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.766
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.778
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.601
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.830
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.125
	CNS0095610	Silvery flower (tetraploid) 1	36.371
	CNS0095611	Silvery flower (tetraploid) 2	37.372
	CNS0095612	Silvery flower (tetraploid) 3	34.003
	CNS0095613	Golden flower (tetraploid) 1	47.095
	CNS0095614	Golden flower (tetraploid) 2	40.090
	CNS0095615	Golden flower (tetraploid) 3	41.919
CRA001975	CRR073297	Stem 1	21.457
	CRR073298	Stem 2	22.962
	CRR073299	Stem 3	17.802
	CRR073300	Leaf 1	24.385
	CRR073301	Leaf 2	21.039
	CRR073302	Leaf 3	22.955
	CRR073303	Juvenile bud 1	26.295
	CRR073304	Juvenile bud 2	24.003
	CRR073305	Juvenile bud 3	18.724
	CRR073306	Third green 1	8.761
	CRR073307	Third green 2	9.785
	CRR073308	Third green 3	13.083
	CRR073309	Second white 1	24.864
	CRR073310	Second white 2	22.057
	CRR073311	Second white 3	17.117
	CRR073312	Silver flowering 1	21.043
	CRR073313	Silver flowering 2	14.633
	CRR073314	Silver flowering 3	10.154
	CRR073315	Gold flowering 1	21.139
	CRR073316	Gold flowering 2	24.758
	CRR073317	Gold flowering 3	20.270
	CRR073318	Tawny withering 1	14.667
	CRR073319	Tawny withering 2	20.390
	CRR073320	Tawny withering 3	14.800