Gene detail

Detail information of GWHGAAZE003886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076710.1	5.99556E-48	PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	9E-12	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|A0A067KLZ8\|A0A067KLZ8_JATCU	1E-45	Uncharacterized protein {ECO:0000313\|EMBL:KDP32824.1}
TAIR10	AT1G16930.1	3E-11	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106493266	106495339	+
GWHAAZE00000001	mRNA	106493266	106495339	+
GWHAAZE00000001	exon	106493266	106493457	+
GWHAAZE00000001	exon	106493547	106493936	+
GWHAAZE00000001	exon	106494019	106494144	+
GWHAAZE00000001	exon	106494259	106494402	+
GWHAAZE00000001	exon	106495043	106495339	+
GWHAAZE00000001	CDS	106493266	106493457	+
GWHAAZE00000001	CDS	106493547	106493936	+
GWHAAZE00000001	CDS	106494019	106494144	+
GWHAAZE00000001	CDS	106494259	106494402	+
GWHAAZE00000001	CDS	106495043	106495339	+

Transcript Sequence
>GWHTAAZE003892 TACAGGGTGAACCAAAATATTATTTCAGGAGTTCAGATATGTGAGTTGCCAGATGAAATTCTCATAGCCATTTTGTCCCGCCTAACGATGAAAGGAGCAGCATGTACCACCGTTCTCTCTCATAGGTGGAAAATTTATGGACGCATACCACTGGTAGCTTGGACTTTGATGGTTCAAACATTTTATGGACATTCACATAAGGGTGCCACCATCGACGAATTCAGAGTCCATTTTGATTTGGATTCAAGTTCTACATCATATATTGATAGCTGGATTAACTTTGCATTGAAAAAGAGAGCGCAGAGACTTGAGCTAGACTTGGAGCCGGAGCGTGTGGCTGTACATTGGAAGCGAATGTACCCATTCCCAACAGAATCTGCTATGGGTCATCCAACCATCAATTCCCTAACCTCTCTCAAGTTGAATTATGTAGGCGTGACTCAGGAACTACTTGAGTATGTTTTATCCAACTGCCCCTTTCTTAAATTTCTATGCGTTTGCAGCTCACAAATCCTGGTTGGTGCACAAGTTGTTGCTGCACCTCCAAAGCTTGAGTACATGGAGATATCCTACTGCCAAAGAAATGCTCCAAATCTCACAGATGTATCATTCGGATCACAATATGCTGGAGACATTGTTAAGAAATTCCATGAGCATTCCATCCCTCCCTCTCAGATAGAGAAACTTAAGTTGGACTTGAGTTTTTATCCTTTGGAGAGCCTTGACGGATTCCCTAACTTAGAGAATCTCAAGCAATTGGAATTGGTAGTGACGGGAGGGGAACAAAGCGGTATCCATTGCTACACAACACTGCTAGAGAAATGCCCAATGTTGTATAGACTTTGCGTGAAGTTTAAATGGTTAAGGTTTCCTAACAAAATAGTGATGCAAGAGAAGGAATGCAGGCTCAACAGTCTCAATTTTGTTGAAATCGCTGGCTTTCGTGGGGGAGTATCTGATGTGGAGCTGGCTACGTTTCTGGTTACAAATGCCCCATATCTTGAGAAGATTACTATTGATACTCGATTTCCTCTTCACTTCACGGGAACCTTATTGGAGGTACTCCAAAAAGAGAACATGGCTGCAGAAGAACGTGCTAGGCAGCTGTCGACTAAGCTATCTCCAAGTGTTGAATTCCTTATACTTTGA

Network for GWHGAAZE003886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08387.11	FBD	300	339	3.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.472
	SRR3591706	second leaf	3.500
	SRR3591707	mature leaf	6.346
	SRR3591708	Shoot apex	5.279
	SRR3591709	Stem	6.384
	SRR3591710	White floral bud	5.004
	SRR3591711	White flower	6.394
	SRR3591712	Green floral bud	4.266
	SRR3591713	Yellow flower	5.608
SRP173429	SRR8316895	Juvenile bud stage	0.190
	SRR8316896	Juvenile bud stage	0.706
	SRR8316897	Juvenile bud stage	0.093
	SRR8316894	Third green stage	0.012
	SRR8316900	Third green stage	0.145
	SRR8316901	Third green stage	0.076
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.307
	SRR8316903	Complete white stage	0.087
	SRR8316902	Silver flowering stage	0.057
	SRR8316904	Silver flowering stage	0.091
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.270
	SRR6706287	Light intensity 50%	0.058
	SRR6706288	Light intensity 20%	0.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.183
	CNS0095593	Slightly white alabastrum(diploid) 2	0.269
	CNS0095594	Slightly white alabastrum(diploid) 3	0.418
	CNS0095595	Whole white alabastrum(diploid) 2	0.158
	CNS0095596	Whole white alabastrum(diploid) 3	0.133
	CNS0095597	Whole white alabastrum(diploid) 4	0.006
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.072
	CNS0095601	Golden flower (diploid) 1	0.218
	CNS0095602	Golden flower (diploid) 2	0.032
	CNS0095603	Golden flower (diploid) 3	0.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.418
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.593
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.587
	CNS0095610	Silvery flower (tetraploid) 1	0.698
	CNS0095611	Silvery flower (tetraploid) 2	0.511
	CNS0095612	Silvery flower (tetraploid) 3	0.369
	CNS0095613	Golden flower (tetraploid) 1	0.215
	CNS0095614	Golden flower (tetraploid) 2	0.594
	CNS0095615	Golden flower (tetraploid) 3	0.538
CRA001975	CRR073297	Stem 1	0.405
	CRR073298	Stem 2	0.460
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.115
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.376
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.048
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.044
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.135
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000