Gene detail

Detail information of GWHGAAZE003894

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797379.1	1.086E-127	PREDICTED: syntaxin-132-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SRV7\|SY131_ARATH	1E-118	Putative syntaxin-131
trEMBL	tr\|K4AVP6\|K4AVP6_SOLLC	2E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g056810.2.1}
TAIR10	AT3G03800.1	3E-83	syntaxin of plants 131

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106635614	106642833	+
GWHAAZE00000001	mRNA	106635614	106642833	+
GWHAAZE00000001	exon	106635614	106635661	+
GWHAAZE00000001	exon	106637169	106637217	+
GWHAAZE00000001	exon	106638352	106638376	+
GWHAAZE00000001	exon	106638456	106638594	+
GWHAAZE00000001	exon	106638764	106638837	+
GWHAAZE00000001	exon	106638935	106638977	+
GWHAAZE00000001	exon	106639246	106639306	+
GWHAAZE00000001	exon	106639563	106639588	+
GWHAAZE00000001	exon	106639688	106639765	+
GWHAAZE00000001	exon	106641224	106641304	+
GWHAAZE00000001	exon	106641537	106641602	+
GWHAAZE00000001	exon	106642651	106642833	+
GWHAAZE00000001	CDS	106635614	106635661	+
GWHAAZE00000001	CDS	106637169	106637217	+
GWHAAZE00000001	CDS	106638352	106638376	+
GWHAAZE00000001	CDS	106638456	106638594	+
GWHAAZE00000001	CDS	106638764	106638837	+
GWHAAZE00000001	CDS	106638935	106638977	+
GWHAAZE00000001	CDS	106639246	106639306	+
GWHAAZE00000001	CDS	106639563	106639588	+
GWHAAZE00000001	CDS	106639688	106639765	+
GWHAAZE00000001	CDS	106641224	106641304	+
GWHAAZE00000001	CDS	106641537	106641602	+
GWHAAZE00000001	CDS	106642651	106642833	+

Transcript Sequence
>GWHTAAZE003900 ATGAGTGATTTCTGTTTAGCCAAGAATCCAAACCCCAGTGGTATGCTGGATGCTCATGAGGAATCGAGAGTTATAACCAATGCTGCTGCAATGAAAGCCAATGTACAATCGTTAACTGTCACAAGAATACATTATATTACATTCATCGTTATGTCGGTTTTTGAATCTGCAGCAATCAAACAGCGCATGGAGAAAGATGTCGACGAGGTTCAAAGAATTGCTCGGACAATTAAATCAAAAATTGAGACAATTGACAGAGAAAATTTGGCGAATCGGCAGAAGCCTGGGTTTGGGAAAGGAACTGCTGTAGACCGATCAAGAACAGCAACAACAGTTGCCTTGAAAAAGAAGTTCAAAGACAAGATGACTGAATTTCAAACACTGAGGCAATACATCCATCAAGAGCACCGGGAGGTGGTTGAAAGGCGAGTTTATACAGTTACGGGCACCAGAGCTGATGAAGAGACAATTGATCGATTGATAGAGACCGGGGATAGTGAACAAATTCTCCAGAAAGCAATTCGGGAACAAGGGAGAGGCCAGGTATTGGACACCCTTGCAGAAATTCAAGAACGGCAAGATGCAGTGATGGAAGTAGAGAGGAAACTTCTTGAATTGCAACAGATATTCTTAGATATGGCGGTTTTGGTGGATGCTCAAGGGGAGTTGCTGGACAATATAGAAACACAAGTCTCAAGTGCAGTTGACCATGTACAATCTGGAAATAAGATGCTCCAAAGGGCAAAGAGTTTGCAAAAAAGCAACAGAAAATGGATGTGTGTTGCGGTCATAATCTTCCTTATCGTTGTTGTTATCATTGTTGTTGGGGTTCTCAAGCCATGGACATCTGCATCACCAAATCAACACCCATAA

Network for GWHGAAZE003894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00804.26	Syntaxin	27	221	6.30E-58
PF05739.20	SNARE	222	274	3.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08486	STX1B_2_3	SNARE interactions in vesicular transport	map04130
K08486	STX1B_2_3	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.236
	SRR3591706	second leaf	0.880
	SRR3591707	mature leaf	0.406
	SRR3591708	Shoot apex	1.147
	SRR3591709	Stem	0.814
	SRR3591710	White floral bud	57.718
	SRR3591711	White flower	2.907
	SRR3591712	Green floral bud	29.362
	SRR3591713	Yellow flower	3.004
SRP173429	SRR8316895	Juvenile bud stage	1.147
	SRR8316896	Juvenile bud stage	4.069
	SRR8316897	Juvenile bud stage	3.733
	SRR8316894	Third green stage	2.691
	SRR8316900	Third green stage	12.419
	SRR8316901	Third green stage	14.001
	SRR8316898	Complete white stage	0.109
	SRR8316899	Complete white stage	0.125
	SRR8316903	Complete white stage	0.116
	SRR8316902	Silver flowering stage	0.415
	SRR8316904	Silver flowering stage	1.044
	SRR8316905	Silver flowering stage	0.294
	SRR8316906	Gold flowering stage	0.329
	SRR8316907	Gold flowering stage	0.020
	SRR8316908	Gold flowering stage	1.614
SRP132670	SRR6706286	Control	9.022
	SRR6706287	Light intensity 50%	8.727
	SRR6706288	Light intensity 20%	7.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.095
	CNS0095593	Slightly white alabastrum(diploid) 2	10.022
	CNS0095594	Slightly white alabastrum(diploid) 3	15.998
	CNS0095595	Whole white alabastrum(diploid) 2	37.489
	CNS0095596	Whole white alabastrum(diploid) 3	46.565
	CNS0095597	Whole white alabastrum(diploid) 4	52.368
	CNS0095598	Silvery flower (diploied) 1	2.691
	CNS0095599	Silvery flower (diploied) 2	5.956
	CNS0095600	Silvery flower (diploied) 3	1.534
	CNS0095601	Golden flower (diploid) 1	4.202
	CNS0095602	Golden flower (diploid) 2	0.798
	CNS0095603	Golden flower (diploid) 3	0.730
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.870
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.585
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.292
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.117
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.505
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.396
	CNS0095610	Silvery flower (tetraploid) 1	1.838
	CNS0095611	Silvery flower (tetraploid) 2	5.927
	CNS0095612	Silvery flower (tetraploid) 3	12.581
	CNS0095613	Golden flower (tetraploid) 1	3.042
	CNS0095614	Golden flower (tetraploid) 2	1.712
	CNS0095615	Golden flower (tetraploid) 3	3.438
CRA001975	CRR073297	Stem 1	4.519
	CRR073298	Stem 2	3.018
	CRR073299	Stem 3	1.075
	CRR073300	Leaf 1	21.687
	CRR073301	Leaf 2	9.856
	CRR073302	Leaf 3	5.306
	CRR073303	Juvenile bud 1	15.745
	CRR073304	Juvenile bud 2	9.699
	CRR073305	Juvenile bud 3	0.897
	CRR073306	Third green 1	5.792
	CRR073307	Third green 2	5.310
	CRR073308	Third green 3	5.003
	CRR073309	Second white 1	0.114
	CRR073310	Second white 2	1.591
	CRR073311	Second white 3	0.646
	CRR073312	Silver flowering 1	5.420
	CRR073313	Silver flowering 2	5.653
	CRR073314	Silver flowering 3	3.340
	CRR073315	Gold flowering 1	5.036
	CRR073316	Gold flowering 2	3.129
	CRR073317	Gold flowering 3	0.206
	CRR073318	Tawny withering 1	6.884
	CRR073319	Tawny withering 2	10.460
	CRR073320	Tawny withering 3	7.126