Detail information of GWHGAAZE003897


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002319181.22.03309E-68hypothetical protein POPTR_0013s05920g [Populus trichocarpa]
Swissprottr|Q6ID70|Y3377_ARATH5E-60Uncharacterized protein At3g03773
trEMBLtr|B9I621|B9I621_POPTR8E-69Uncharacterized protein {ECO:0000313|EMBL:EEE95104.2}
TAIR10AT3G03773.23E-48HSP20-like chaperones superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene106674437106681318-
GWHAAZE00000001mRNA106674437106681318-
GWHAAZE00000001exon106681227106681318-
GWHAAZE00000001exon106680633106680816-
GWHAAZE00000001exon106674437106674628-
GWHAAZE00000001CDS106681227106681318-
GWHAAZE00000001CDS106680633106680816-
GWHAAZE00000001CDS106674437106674628-
Transcript Sequence

Network for GWHGAAZE003897

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0031
CFinderModule0277


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04969.17CS361093.90E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE003897.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055606570Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.485
SRR3591706second leaf14.164
SRR3591707mature leaf20.495
SRR3591708Shoot apex26.621
SRR3591709Stem42.518
SRR3591710White floral bud38.453
SRR3591711White flower47.744
SRR3591712Green floral bud35.354
SRR3591713Yellow flower26.248
SRP173429 SRR8316895Juvenile bud stage 19.599
SRR8316896Juvenile bud stage 28.600
SRR8316897Juvenile bud stage 10.976
SRR8316894Third green stage 11.902
SRR8316900Third green stage 34.078
SRR8316901Third green stage 32.099
SRR8316898Complete white stage 13.400
SRR8316899Complete white stage 62.214
SRR8316903Complete white stage 20.674
SRR8316902Silver flowering stage11.239
SRR8316904Silver flowering stage16.839
SRR8316905Silver flowering stage8.420
SRR8316906Gold flowering stage 21.269
SRR8316907Gold flowering stage 26.958
SRR8316908Gold flowering stage 23.330
SRP132670SRR6706286Control32.318
SRR6706287Light intensity 50%35.973
SRR6706288Light intensity 20%38.703
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.008
CNS0095593Slightly white alabastrum(diploid) 241.220
CNS0095594Slightly white alabastrum(diploid) 334.232
CNS0095595Whole white alabastrum(diploid) 227.237
CNS0095596Whole white alabastrum(diploid) 324.999
CNS0095597Whole white alabastrum(diploid) 428.078
CNS0095598Silvery flower (diploied) 137.125
CNS0095599Silvery flower (diploied) 225.610
CNS0095600Silvery flower (diploied) 333.275
CNS0095601Golden flower (diploid) 136.842
CNS0095602Golden flower (diploid) 231.257
CNS0095603Golden flower (diploid) 330.425
CNS0095604Slightly white alabastrum(tetraploid) 133.168
CNS0095605Slightly white alabastrum(tetraploid) 229.512
CNS0095606Slightly white alabastrum(tetraploid) 345.952
CNS0095607Whole white alabastrum(tetraploid) 123.307
CNS0095608Whole white alabastrum(tetraploid) 225.111
CNS0095609Whole white alabastrum(tetraploid) 331.102
CNS0095610Silvery flower (tetraploid) 142.396
CNS0095611Silvery flower (tetraploid) 237.621
CNS0095612Silvery flower (tetraploid) 328.782
CNS0095613Golden flower (tetraploid) 124.521
CNS0095614Golden flower (tetraploid) 230.360
CNS0095615Golden flower (tetraploid) 319.447
CRA001975CRR073297Stem 125.018
CRR073298Stem 226.040
CRR073299Stem 329.659
CRR073300Leaf 124.422
CRR073301Leaf 229.652
CRR073302Leaf 320.956
CRR073303Juvenile bud 121.180
CRR073304Juvenile bud 218.443
CRR073305Juvenile bud 325.976
CRR073306Third green 17.877
CRR073307Third green 26.213
CRR073308Third green 36.645
CRR073309Second white 18.249
CRR073310Second white 24.682
CRR073311Second white 33.743
CRR073312Silver flowering 13.285
CRR073313Silver flowering 24.835
CRR073314Silver flowering 38.256
CRR073315Gold flowering 120.882
CRR073316Gold flowering 222.714
CRR073317Gold flowering 316.588
CRR073318Tawny withering 124.327
CRR073319Tawny withering 228.731
CRR073320Tawny withering 336.872