Gene detail

Detail information of GWHGAAZE003913

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007209122.1	0	hypothetical protein PRUPE_ppa005461mg [Prunus persica]
Swissprot	tr\|O64668\|PSNA_ARATH	0	Presenilin-like protein At1g08700
trEMBL	tr\|M5WAI2\|M5WAI2_PRUPE	0	Presenilin {ECO:0000256\|RuleBase:RU361148}
TAIR10	AT1G08700.1	1E-124	Presenilin-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106939079	106941718	+
GWHAAZE00000001	mRNA	106939079	106941718	+
GWHAAZE00000001	exon	106939079	106939283	+
GWHAAZE00000001	exon	106940583	106941718	+
GWHAAZE00000001	CDS	106939079	106939283	+
GWHAAZE00000001	CDS	106940583	106941718	+

Transcript Sequence
>GWHTAAZE003919 ATGGACGGAAGCATTTTGGAATCAATGGGAGTAGAAATAATCGGCGTAATGTCCCCAGTTTCAATCTGCATGTTCTTAGTGGTCCTTTTAGTCTACACCCTCTCTTCTTCCACCACCACCTCCTCCTCCTCCGATCAGATCCGCACAGCCGCCAATTTAGTCTACCTCGAAACCCCCTCGGATTCCGCCACCCAGAAGCTCGAAGGTGCACTTCTCAATGCCCTAGTTTTTGTTATCCTAATAGCTGCAGTAACATTCCTCCTAGTCTTGCTATACTATTATAATTTCACTAATTTCTTGAAGAACTATATGAGGTTCTCGGCTTTCTTTGTACTTGGAACAATGGGTGGGTCTATTTTTCTGTCTATAATCCAAGAGTTTTCGATACCAGTTGATGCAATTACTTGTTTTGTGTTGCTGTTTAATTTTAGTGTTGTGGGCGTGTTGTCTGTTTTTTCGGGGGGCATACCGATTTTCCTGAGGCAGAGTTATATGGTTCTTTTGGGTATAATTGTGGCTGCTTGGTTTACTAAATTGCCCGAATGGACTACATGGGCTTTGTTGGTGGCATTGGCTTTGTATGATTTGGTTGCAGTTTTGGCCCCTGGTGGGCCTCTCAAGATTTTGGTTGAATTGGCCTCTAGTAGGGATGATGAGCTTCCAGCTCTTGTGTACGAGGCTAGGCCAATTGTTTCTAGGGCCGGTGGAGGCGGTGGTGGTCGTTCGGCTATGGGTCTTTTGGTTGGTGGGGTTTCAGATTCGGGTTCAGTTGAGCTTCAGGTCCGGCACGAGAATGAGAATCCGGATTTTATTTCCTCCGAGGTTCAAAACAATGAAATAGAGATTCTTGTAGATGAAGAAGGAGAGACATCTCCATTGGTGCCTAATTTGTTGAGGGGGGATAGGGAGCAAACATCATCAAGTAGTCGCGGTGGATCTTCTTTAGATAATGGTTCTTCATCGGGTAGAAATAGGCAATCCCCGGGAGGAGTAATTGCTGAGGAGGAAATGTCTCCACTTGTTGAAATGTTGGGTCTTGGAAATGAGAGAGAAGAGTCTGATGCCCCGATCAGTCGAGGTATAAAACTTGGTCTAGGGGACTTTGTTTTCTATAGTGTTCTTGTGGGTAGAGCTGCAATGTATGATTTGATGACAGTTTATGCTTGTTACCTTGCGATTATCTCGGGATTGGGGTGCACGCTTATTTTGTTGGCCGTTTGTCGTCATGCTTTGCCAGCTCTCCCCATTTCTATAGCTCTTGGGATCATGTTTTACTTCTTAACTCGGTTGCTAATGGAACCTTTTGTTGTTGGTACTTCAACAAATTTGATGATGTTTTGA

Network for GWHGAAZE003913

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01080.18	Presenilin	11	436	7.00E-126

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04505	PSEN1, PS1	Wnt signaling pathway	map04310
		Notch signaling pathway	map04330
		Neurotrophin signaling pathway	map04722
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0016485	biological_process	protein processing
GO:0016021	cellular_component	integral component of membrane
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.854
	SRR3591706	second leaf	9.966
	SRR3591707	mature leaf	10.613
	SRR3591708	Shoot apex	16.878
	SRR3591709	Stem	14.765
	SRR3591710	White floral bud	19.163
	SRR3591711	White flower	25.724
	SRR3591712	Green floral bud	17.274
	SRR3591713	Yellow flower	17.902
SRP173429	SRR8316895	Juvenile bud stage	9.773
	SRR8316896	Juvenile bud stage	15.733
	SRR8316897	Juvenile bud stage	6.125
	SRR8316894	Third green stage	5.393
	SRR8316900	Third green stage	15.423
	SRR8316901	Third green stage	13.408
	SRR8316898	Complete white stage	7.435
	SRR8316899	Complete white stage	22.275
	SRR8316903	Complete white stage	12.934
	SRR8316902	Silver flowering stage	9.487
	SRR8316904	Silver flowering stage	12.835
	SRR8316905	Silver flowering stage	6.892
	SRR8316906	Gold flowering stage	18.497
	SRR8316907	Gold flowering stage	17.665
	SRR8316908	Gold flowering stage	18.040
SRP132670	SRR6706286	Control	15.950
	SRR6706287	Light intensity 50%	15.268
	SRR6706288	Light intensity 20%	15.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.355
	CNS0095593	Slightly white alabastrum(diploid) 2	14.757
	CNS0095594	Slightly white alabastrum(diploid) 3	10.874
	CNS0095595	Whole white alabastrum(diploid) 2	10.198
	CNS0095596	Whole white alabastrum(diploid) 3	10.311
	CNS0095597	Whole white alabastrum(diploid) 4	8.563
	CNS0095598	Silvery flower (diploied) 1	13.119
	CNS0095599	Silvery flower (diploied) 2	10.135
	CNS0095600	Silvery flower (diploied) 3	24.527
	CNS0095601	Golden flower (diploid) 1	14.120
	CNS0095602	Golden flower (diploid) 2	21.791
	CNS0095603	Golden flower (diploid) 3	22.622
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.184
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.763
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.192
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.844
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.664
	CNS0095610	Silvery flower (tetraploid) 1	20.894
	CNS0095611	Silvery flower (tetraploid) 2	24.296
	CNS0095612	Silvery flower (tetraploid) 3	23.550
	CNS0095613	Golden flower (tetraploid) 1	10.806
	CNS0095614	Golden flower (tetraploid) 2	21.449
	CNS0095615	Golden flower (tetraploid) 3	18.522
CRA001975	CRR073297	Stem 1	13.935
	CRR073298	Stem 2	12.999
	CRR073299	Stem 3	12.776
	CRR073300	Leaf 1	14.598
	CRR073301	Leaf 2	12.575
	CRR073302	Leaf 3	13.181
	CRR073303	Juvenile bud 1	13.368
	CRR073304	Juvenile bud 2	11.730
	CRR073305	Juvenile bud 3	14.327
	CRR073306	Third green 1	14.475
	CRR073307	Third green 2	12.512
	CRR073308	Third green 3	13.603
	CRR073309	Second white 1	19.702
	CRR073310	Second white 2	14.261
	CRR073311	Second white 3	14.580
	CRR073312	Silver flowering 1	15.881
	CRR073313	Silver flowering 2	17.723
	CRR073314	Silver flowering 3	16.068
	CRR073315	Gold flowering 1	4.851
	CRR073316	Gold flowering 2	9.292
	CRR073317	Gold flowering 3	7.969
	CRR073318	Tawny withering 1	14.058
	CRR073319	Tawny withering 2	10.542
	CRR073320	Tawny withering 3	13.244