Gene detail

Detail information of GWHGAAZE003917

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009782999.1	1.2189E-91	PREDICTED: transcriptional activator Myb-like [Nicotiana sylvestris]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	4E-36	Transcription factor MYB44
trEMBL	tr\|A0A059PRU6\|A0A059PRU6_SALMI	5E-88	MYB-related transcription factor {ECO:0000313\|EMBL:AGN52094.1}
TAIR10	AT1G69560.1	1E-50	myb domain protein 105

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107014396	107016579	+
GWHAAZE00000001	mRNA	107014396	107016579	+
GWHAAZE00000001	exon	107014396	107014717	+
GWHAAZE00000001	exon	107015218	107015652	+
GWHAAZE00000001	exon	107016377	107016579	+
GWHAAZE00000001	CDS	107014396	107014717	+
GWHAAZE00000001	CDS	107015218	107015652	+
GWHAAZE00000001	CDS	107016377	107016579	+

Transcript Sequence
>GWHTAAZE003923 ATGAGTAGTCTAACTGGTTATGGGGATATAAGCATTAGACCTCCAACTTCACCTCAAGTACTTTCTCTCTCTATGGAGTATTTTAGAGAGAGAGTGGGGGGTGGTCCATTTGAGGGTGGGGTTGAAAGAAAAGGTGTTTTGTTGAACCACAGTGAGGGTGAGGGTGATCCATTAATGGTAAATGAGAGGAAAAATGGGCGTACACAGCTGATTGCTAGAGGACATTGGAGACCTCATGAAGATGTTAGGCTCAAAGAGCTTGTTTCTCTATATGGTCCTCAAAATTGGAACTTGATTGCTGAAAAACTTGAAGGAAGGTCAGGGAAAAGTTGTAGACTGAGATGGTTCAATCAGCTAGATCCGAAGATAAACAGAAGGGCATTCAGCGAAGAGGAAGAAGATAGGCTATTAGCCGCGCACCAAATGTACGGCAACCGATGGGCGATTATCGCTAGGCTGTTTCCGGGGAGGACCGATAACGCGGTAAAGAATCACTGGCATGTGATAATGGCAAGGAAATATAGGGAGAGAAACAGCGTTTACAGGAGGCGGAGAGTTCCTCATGGAGTGGTGGCGATAAATAATAAGAACATTAAAAATGATATTGCTTCTAGTCAACAATCAAGTAGCAATGTGAATATTATTAATGATGAATGTGGAGGTTCAAGCTGCACTCAGCTTTCTCTCACTACCTCTTCAGTACTGCCTGTTTCTCTCTCTAGGTTCAGTCCTGCTCAGCAGTGCCAGTTACACATGGATTCATCTGCTGAGGAAAAACTGGGTACAATGAGGGATGCTGCAGATGAATACACTCACTCGGATTCAAACTCAGAACTCTCAGCAATTGAGTCAGTTGCCAACAACAACACAAGCACCAATCTCTACACATGTTGCGAAAATGAGAACATCACCACCGCCAAAATTAACTTCATTGATTTCCTTAGAGTAGGTCCCACTTAA

Network for GWHGAAZE003917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	73	118	5.20E-14
PF00249.32	Myb_DNA-binding	125	168	3.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.980
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.795
	SRR3591709	Stem	8.563
	SRR3591710	White floral bud	0.204
	SRR3591711	White flower	0.501
	SRR3591712	Green floral bud	0.226
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.471
	SRR8316896	Juvenile bud stage	1.841
	SRR8316897	Juvenile bud stage	1.198
	SRR8316894	Third green stage	0.300
	SRR8316900	Third green stage	0.599
	SRR8316901	Third green stage	0.129
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.291
SRP132670	SRR6706286	Control	0.138
	SRR6706287	Light intensity 50%	0.417
	SRR6706288	Light intensity 20%	0.241
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.189
	CNS0095593	Slightly white alabastrum(diploid) 2	0.789
	CNS0095594	Slightly white alabastrum(diploid) 3	2.936
	CNS0095595	Whole white alabastrum(diploid) 2	0.157
	CNS0095596	Whole white alabastrum(diploid) 3	0.682
	CNS0095597	Whole white alabastrum(diploid) 4	0.269
	CNS0095598	Silvery flower (diploied) 1	0.116
	CNS0095599	Silvery flower (diploied) 2	0.058
	CNS0095600	Silvery flower (diploied) 3	0.086
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.144
	CNS0095603	Golden flower (diploid) 3	0.080
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.455
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.548
	CNS0095610	Silvery flower (tetraploid) 1	0.185
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.710
	CRR073298	Stem 2	0.992
	CRR073299	Stem 3	1.862
	CRR073300	Leaf 1	0.510
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.885
	CRR073319	Tawny withering 2	1.048
	CRR073320	Tawny withering 3	0.771