Detail information of GWHGAAZE003926


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650297.10PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera]
trEMBLtr|B9MYB7|B9MYB7_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP50568.1}
TAIR10AT1G06720.10P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene107168775107176747-
GWHAAZE00000001mRNA107168775107176747-
GWHAAZE00000001exon107168775107168942-
GWHAAZE00000001exon107169526107169729-
GWHAAZE00000001exon107169949107170218-
GWHAAZE00000001exon107171071107171280-
GWHAAZE00000001exon107172751107172990-
GWHAAZE00000001exon107173285107173503-
GWHAAZE00000001exon107173596107173660-
GWHAAZE00000001exon107174570107174837-
GWHAAZE00000001exon107175429107175640-
GWHAAZE00000001exon107176089107176188-
GWHAAZE00000001exon107176331107176747-
GWHAAZE00000001CDS107176331107176747-
GWHAAZE00000001CDS107176089107176188-
GWHAAZE00000001CDS107175429107175640-
GWHAAZE00000001CDS107174570107174837-
GWHAAZE00000001CDS107173596107173660-
GWHAAZE00000001CDS107173285107173503-
GWHAAZE00000001CDS107172751107172990-
GWHAAZE00000001CDS107171071107171280-
GWHAAZE00000001CDS107169949107170218-
GWHAAZE00000001CDS107169526107169729-
GWHAAZE00000001CDS107168775107168942-
Transcript Sequence

Network for GWHGAAZE003926

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04950.13RIBIOP_C3406228.70E-87
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14569BMS1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.262
SRR3591706second leaf14.222
SRR3591707mature leaf13.836
SRR3591708Shoot apex20.100
SRR3591709Stem15.302
SRR3591710White floral bud16.485
SRR3591711White flower18.686
SRR3591712Green floral bud23.533
SRR3591713Yellow flower12.485
SRP173429 SRR8316895Juvenile bud stage 13.775
SRR8316896Juvenile bud stage 19.790
SRR8316897Juvenile bud stage 8.381
SRR8316894Third green stage 8.984
SRR8316900Third green stage 20.160
SRR8316901Third green stage 21.031
SRR8316898Complete white stage 3.836
SRR8316899Complete white stage 17.252
SRR8316903Complete white stage 10.407
SRR8316902Silver flowering stage5.330
SRR8316904Silver flowering stage8.168
SRR8316905Silver flowering stage4.042
SRR8316906Gold flowering stage 10.482
SRR8316907Gold flowering stage 11.552
SRR8316908Gold flowering stage 13.474
SRP132670SRR6706286Control16.502
SRR6706287Light intensity 50%17.784
SRR6706288Light intensity 20%17.835
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.416
CNS0095593Slightly white alabastrum(diploid) 214.388
CNS0095594Slightly white alabastrum(diploid) 317.152
CNS0095595Whole white alabastrum(diploid) 211.982
CNS0095596Whole white alabastrum(diploid) 311.772
CNS0095597Whole white alabastrum(diploid) 410.339
CNS0095598Silvery flower (diploied) 114.907
CNS0095599Silvery flower (diploied) 212.738
CNS0095600Silvery flower (diploied) 316.748
CNS0095601Golden flower (diploid) 112.848
CNS0095602Golden flower (diploid) 214.404
CNS0095603Golden flower (diploid) 314.260
CNS0095604Slightly white alabastrum(tetraploid) 116.239
CNS0095605Slightly white alabastrum(tetraploid) 213.734
CNS0095606Slightly white alabastrum(tetraploid) 327.332
CNS0095607Whole white alabastrum(tetraploid) 18.529
CNS0095608Whole white alabastrum(tetraploid) 28.159
CNS0095609Whole white alabastrum(tetraploid) 318.671
CNS0095610Silvery flower (tetraploid) 117.812
CNS0095611Silvery flower (tetraploid) 216.165
CNS0095612Silvery flower (tetraploid) 315.014
CNS0095613Golden flower (tetraploid) 18.540
CNS0095614Golden flower (tetraploid) 215.466
CNS0095615Golden flower (tetraploid) 39.884
CRA001975CRR073297Stem 126.244
CRR073298Stem 223.998
CRR073299Stem 317.903
CRR073300Leaf 124.275
CRR073301Leaf 222.750
CRR073302Leaf 315.834
CRR073303Juvenile bud 116.730
CRR073304Juvenile bud 29.562
CRR073305Juvenile bud 322.068
CRR073306Third green 13.805
CRR073307Third green 22.983
CRR073308Third green 34.522
CRR073309Second white 13.709
CRR073310Second white 26.678
CRR073311Second white 36.911
CRR073312Silver flowering 15.130
CRR073313Silver flowering 24.637
CRR073314Silver flowering 35.166
CRR073315Gold flowering 19.244
CRR073316Gold flowering 211.249
CRR073317Gold flowering 35.160
CRR073318Tawny withering 117.061
CRR073319Tawny withering 214.875
CRR073320Tawny withering 315.950