Detail information of GWHGAAZE003928


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006838161.15.3641E-139hypothetical protein AMTR_s00106p00107190 [Amborella trichopoda]
trEMBLtr|W1P1B5|W1P1B5_AMBTC2E-139Uncharacterized protein {ECO:0000313|EMBL:ERN00730.1}
TAIR10AT1G06720.13E-69P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene107178916107181040-
GWHAAZE00000001mRNA107178916107181040-
GWHAAZE00000001exon107178916107179110-
GWHAAZE00000001exon107179558107179676-
GWHAAZE00000001exon107179781107179871-
GWHAAZE00000001exon107179972107180118-
GWHAAZE00000001exon107180858107181040-
GWHAAZE00000001CDS107180858107181040-
GWHAAZE00000001CDS107179972107180118-
GWHAAZE00000001CDS107179781107179871-
GWHAAZE00000001CDS107179558107179676-
GWHAAZE00000001CDS107178916107179110-
Transcript Sequence

Network for GWHGAAZE003928

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14569BMS1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.849
SRR3591706second leaf9.665
SRR3591707mature leaf7.217
SRR3591708Shoot apex7.701
SRR3591709Stem7.892
SRR3591710White floral bud10.548
SRR3591711White flower9.682
SRR3591712Green floral bud10.615
SRR3591713Yellow flower6.082
SRP173429 SRR8316895Juvenile bud stage 6.296
SRR8316896Juvenile bud stage 6.269
SRR8316897Juvenile bud stage 4.681
SRR8316894Third green stage 4.225
SRR8316900Third green stage 8.525
SRR8316901Third green stage 7.595
SRR8316898Complete white stage 2.132
SRR8316899Complete white stage 7.570
SRR8316903Complete white stage 6.829
SRR8316902Silver flowering stage2.588
SRR8316904Silver flowering stage5.978
SRR8316905Silver flowering stage2.030
SRR8316906Gold flowering stage 6.814
SRR8316907Gold flowering stage 4.399
SRR8316908Gold flowering stage 4.890
SRP132670SRR6706286Control12.579
SRR6706287Light intensity 50%13.903
SRR6706288Light intensity 20%14.478
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.963
CNS0095593Slightly white alabastrum(diploid) 22.473
CNS0095594Slightly white alabastrum(diploid) 31.692
CNS0095595Whole white alabastrum(diploid) 22.092
CNS0095596Whole white alabastrum(diploid) 31.548
CNS0095597Whole white alabastrum(diploid) 42.814
CNS0095598Silvery flower (diploied) 17.297
CNS0095599Silvery flower (diploied) 23.862
CNS0095600Silvery flower (diploied) 312.848
CNS0095601Golden flower (diploid) 14.137
CNS0095602Golden flower (diploid) 210.642
CNS0095603Golden flower (diploid) 313.656
CNS0095604Slightly white alabastrum(tetraploid) 14.667
CNS0095605Slightly white alabastrum(tetraploid) 23.070
CNS0095606Slightly white alabastrum(tetraploid) 315.072
CNS0095607Whole white alabastrum(tetraploid) 11.435
CNS0095608Whole white alabastrum(tetraploid) 20.911
CNS0095609Whole white alabastrum(tetraploid) 39.610
CNS0095610Silvery flower (tetraploid) 110.684
CNS0095611Silvery flower (tetraploid) 211.377
CNS0095612Silvery flower (tetraploid) 36.945
CNS0095613Golden flower (tetraploid) 12.353
CNS0095614Golden flower (tetraploid) 26.507
CNS0095615Golden flower (tetraploid) 36.841
CRA001975CRR073297Stem 115.270
CRR073298Stem 215.636
CRR073299Stem 311.218
CRR073300Leaf 114.272
CRR073301Leaf 210.629
CRR073302Leaf 38.564
CRR073303Juvenile bud 15.369
CRR073304Juvenile bud 27.714
CRR073305Juvenile bud 312.956
CRR073306Third green 11.457
CRR073307Third green 21.644
CRR073308Third green 33.931
CRR073309Second white 12.140
CRR073310Second white 25.074
CRR073311Second white 35.917
CRR073312Silver flowering 13.345
CRR073313Silver flowering 22.506
CRR073314Silver flowering 34.014
CRR073315Gold flowering 13.031
CRR073316Gold flowering 25.075
CRR073317Gold flowering 34.665
CRR073318Tawny withering 13.594
CRR073319Tawny withering 22.066
CRR073320Tawny withering 33.999