Detail information of GWHGAAZE003931


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010054945.15.93484E-33PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X2 [Eucalyptus grandis]
COGYP_007642.14E-18polynucleotide phosphorylase
Swissprottr|Q69LE7|PNP1_ORYSJ4E-34Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic (Precursor)
trEMBLtr|M0TI58|M0TI58_MUSAM2E-33Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P16710_001}
TAIR10AT3G03710.15E-28polyribonucleotide nucleotidyltransferase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene107258450107260416+
GWHAAZE00000001mRNA107258450107260416+
GWHAAZE00000001exon107258450107258509+
GWHAAZE00000001exon107258827107258940+
GWHAAZE00000001exon107259980107260072+
GWHAAZE00000001exon107260399107260416+
GWHAAZE00000001CDS107258450107258509+
GWHAAZE00000001CDS107258827107258940+
GWHAAZE00000001CDS107259980107260072+
GWHAAZE00000001CDS107260399107260416+
Transcript Sequence

Network for GWHGAAZE003931

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.22RNase_PH32761.50E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00962pnp, PNPT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.684
SRR3591706second leaf12.757
SRR3591707mature leaf10.366
SRR3591708Shoot apex20.523
SRR3591709Stem6.392
SRR3591710White floral bud7.435
SRR3591711White flower10.370
SRR3591712Green floral bud10.918
SRR3591713Yellow flower6.265
SRP173429 SRR8316895Juvenile bud stage 5.001
SRR8316896Juvenile bud stage 5.919
SRR8316897Juvenile bud stage 2.945
SRR8316894Third green stage 3.503
SRR8316900Third green stage 9.825
SRR8316901Third green stage 7.735
SRR8316898Complete white stage 1.090
SRR8316899Complete white stage 5.265
SRR8316903Complete white stage 2.811
SRR8316902Silver flowering stage1.213
SRR8316904Silver flowering stage1.969
SRR8316905Silver flowering stage0.285
SRR8316906Gold flowering stage 2.854
SRR8316907Gold flowering stage 2.008
SRR8316908Gold flowering stage 3.731
SRP132670SRR6706286Control4.046
SRR6706287Light intensity 50%4.926
SRR6706288Light intensity 20%4.703
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.136
CNS0095593Slightly white alabastrum(diploid) 22.150
CNS0095594Slightly white alabastrum(diploid) 33.583
CNS0095595Whole white alabastrum(diploid) 21.909
CNS0095596Whole white alabastrum(diploid) 31.014
CNS0095597Whole white alabastrum(diploid) 43.922
CNS0095598Silvery flower (diploied) 17.862
CNS0095599Silvery flower (diploied) 27.298
CNS0095600Silvery flower (diploied) 35.438
CNS0095601Golden flower (diploid) 13.907
CNS0095602Golden flower (diploid) 28.347
CNS0095603Golden flower (diploid) 36.516
CNS0095604Slightly white alabastrum(tetraploid) 15.100
CNS0095605Slightly white alabastrum(tetraploid) 23.833
CNS0095606Slightly white alabastrum(tetraploid) 318.349
CNS0095607Whole white alabastrum(tetraploid) 11.029
CNS0095608Whole white alabastrum(tetraploid) 22.113
CNS0095609Whole white alabastrum(tetraploid) 38.902
CNS0095610Silvery flower (tetraploid) 19.242
CNS0095611Silvery flower (tetraploid) 29.289
CNS0095612Silvery flower (tetraploid) 35.116
CNS0095613Golden flower (tetraploid) 14.302
CNS0095614Golden flower (tetraploid) 26.485
CNS0095615Golden flower (tetraploid) 35.044
CRA001975CRR073297Stem 18.566
CRR073298Stem 28.335
CRR073299Stem 34.057
CRR073300Leaf 17.182
CRR073301Leaf 26.549
CRR073302Leaf 32.965
CRR073303Juvenile bud 12.101
CRR073304Juvenile bud 23.078
CRR073305Juvenile bud 37.027
CRR073306Third green 10.551
CRR073307Third green 20.290
CRR073308Third green 30.865
CRR073309Second white 11.219
CRR073310Second white 21.860
CRR073311Second white 31.200
CRR073312Silver flowering 10.897
CRR073313Silver flowering 21.775
CRR073314Silver flowering 30.852
CRR073315Gold flowering 16.384
CRR073316Gold flowering 211.879
CRR073317Gold flowering 33.943
CRR073318Tawny withering 10.901
CRR073319Tawny withering 23.423
CRR073320Tawny withering 31.562