Detail information of GWHGAAZE003958


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010111321.10Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [Morus notabilis]
COGYP_007110406.18E-168Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase
Swissprottr|Q945B7|CRD1_EUPES0Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Precursor)
trEMBLtr|W9SI76|W9SI76_9ROSA0Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase {ECO:0000313|EMBL:EXC30799.1}
TAIR10AT3G56940.10dicarboxylate diiron protein, putative (Crd1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene107849355107853445-
GWHAAZE00000001mRNA107849355107853445-
GWHAAZE00000001exon107849355107849618-
GWHAAZE00000001exon107850249107850347-
GWHAAZE00000001exon107850845107851172-
GWHAAZE00000001exon107851268107851332-
GWHAAZE00000001exon107852975107853445-
GWHAAZE00000001CDS107852975107853445-
GWHAAZE00000001CDS107851268107851332-
GWHAAZE00000001CDS107850845107851172-
GWHAAZE00000001CDS107850249107850347-
GWHAAZE00000001CDS107849355107849618-
Transcript Sequence

Network for GWHGAAZE003958

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02915.18Rubrerythrin1332661.00E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04035E1.14.13.81, acsF, chlE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0015995biological_processchlorophyll biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0046872molecular_functionmetal ion binding
GO:0048529molecular_functionmagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf351.902
SRR3591706second leaf1731.112
SRR3591707mature leaf1144.789
SRR3591708Shoot apex646.375
SRR3591709Stem229.255
SRR3591710White floral bud23.427
SRR3591711White flower46.923
SRR3591712Green floral bud30.311
SRR3591713Yellow flower6.738
SRP173429 SRR8316895Juvenile bud stage 112.711
SRR8316896Juvenile bud stage 90.324
SRR8316897Juvenile bud stage 73.318
SRR8316894Third green stage 31.981
SRR8316900Third green stage 51.852
SRR8316901Third green stage 42.659
SRR8316898Complete white stage 4.376
SRR8316899Complete white stage 24.692
SRR8316903Complete white stage 13.690
SRR8316902Silver flowering stage1.782
SRR8316904Silver flowering stage5.651
SRR8316905Silver flowering stage0.498
SRR8316906Gold flowering stage 2.003
SRR8316907Gold flowering stage 2.828
SRR8316908Gold flowering stage 5.027
SRP132670SRR6706286Control20.652
SRR6706287Light intensity 50%15.681
SRR6706288Light intensity 20%16.532
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.580
CNS0095593Slightly white alabastrum(diploid) 255.579
CNS0095594Slightly white alabastrum(diploid) 355.697
CNS0095595Whole white alabastrum(diploid) 239.098
CNS0095596Whole white alabastrum(diploid) 326.263
CNS0095597Whole white alabastrum(diploid) 422.926
CNS0095598Silvery flower (diploied) 1171.722
CNS0095599Silvery flower (diploied) 2176.501
CNS0095600Silvery flower (diploied) 337.369
CNS0095601Golden flower (diploid) 1161.311
CNS0095602Golden flower (diploid) 287.520
CNS0095603Golden flower (diploid) 384.060
CNS0095604Slightly white alabastrum(tetraploid) 152.098
CNS0095605Slightly white alabastrum(tetraploid) 254.515
CNS0095606Slightly white alabastrum(tetraploid) 393.973
CNS0095607Whole white alabastrum(tetraploid) 123.780
CNS0095608Whole white alabastrum(tetraploid) 211.046
CNS0095609Whole white alabastrum(tetraploid) 340.867
CNS0095610Silvery flower (tetraploid) 126.239
CNS0095611Silvery flower (tetraploid) 238.978
CNS0095612Silvery flower (tetraploid) 38.160
CNS0095613Golden flower (tetraploid) 16.016
CNS0095614Golden flower (tetraploid) 233.162
CNS0095615Golden flower (tetraploid) 39.871
CRA001975CRR073297Stem 1105.001
CRR073298Stem 284.542
CRR073299Stem 3109.485
CRR073300Leaf 116.386
CRR073301Leaf 221.302
CRR073302Leaf 321.857
CRR073303Juvenile bud 110.800
CRR073304Juvenile bud 23.276
CRR073305Juvenile bud 310.829
CRR073306Third green 10.241
CRR073307Third green 20.671
CRR073308Third green 32.636
CRR073309Second white 11.191
CRR073310Second white 20.772
CRR073311Second white 30.523
CRR073312Silver flowering 10.290
CRR073313Silver flowering 20.621
CRR073314Silver flowering 30.398
CRR073315Gold flowering 1403.603
CRR073316Gold flowering 2409.752
CRR073317Gold flowering 3311.530
CRR073318Tawny withering 187.829
CRR073319Tawny withering 279.527
CRR073320Tawny withering 381.297