Gene detail

Detail information of GWHGAAZE003961

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14340.1	1.7984E-150	unnamed protein product [Coffea canephora]
COG	YP_007591527.1	1E-12	SET domain-containing protein
Swissprot	tr\|Q93YF5\|SUVH1_TOBAC	9E-143	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
trEMBL	tr\|A0A068V0M7\|A0A068V0M7_COFCA	7E-151	Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313\|EMBL:CDP14340.1}
TAIR10	AT1G73100.1	8E-88	SU(VAR)3-9 homolog 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107882035	107886430	-
GWHAAZE00000001	mRNA	107882035	107886430	-
GWHAAZE00000001	exon	107885546	107886430	-
GWHAAZE00000001	exon	107882035	107882167	-
GWHAAZE00000001	CDS	107885603	107886430	-
GWHAAZE00000001	three_prime_UTR	107885546	107885602	-
GWHAAZE00000001	three_prime_UTR	107882035	107882167	-

Transcript Sequence
>GWHTAAZE003967 GTAATTTTGCCCGACCTTACTTCAGGGGCTGAAAAGATACCCGTTTCTCTTGTAAATGACGTTGATGATGAAAAGGGTCCCGCTTATTTCACTTACGTTCCTATCCTCAAGTATGAGAAACCATTTCCTTCACCTAAGCCATCTTTTAGCTGCACTTGCTCAGGTGGGTGCCAACCCGGTGACCTCAACTGCCCTTGTACTCAAAGAAATGGTGGGTATCTCCCTTATACACCACTCGGGGTTCTTTTGAGTCACAATTCTTTGATACATGAGTGTGGTCCTTCATGTACGTGTCCACCCAATTGCCGAAACCGTGTTTCCCAAGCTGGTTTGAAAGTCCGTCTCGAGGTATTCAAGACCAAGGATAAAGGGTGGGGACTTAGGTCTTGGGATCCGATCCGCAGTGGAGCCTTTATTTGCGAGTATGCTGGTGAAGTTATTGATTTGGCTACTTTAGAGAGGCTTCGGGGTGAAAATGAGGATAATTATATTTTCGACGCTACTCGTAGTTATGAGCCACTGGAAGCTGTTCGTGGCGATAATGCAGAGTCTGCAAAAGTGCCATTTCCGCTTGTTATAAGTGCGAAAGATGGGGGGAATGTGGCTCGGTTTATGAACCACAGTTGTAAGCCGAATGTGTATTGGCAGCCGGTTTTGCGAGAGAGTAACAATGAATCGTATCTTCATATTGCTTTTTATGCGATCGGGCACATTCCTCCTATGCAAGAGTTGACCTACGATTACGGGATGGTACCACCTGACAAAGCGTATCAGAGGCGGAAGAAATGCTTGTGTGGGTCAGTGAAGTGCAGGGGCTGTTTTTACTAGGTGGTGAACGTGGACTTTGATGATGATGGGGCTTTCGAGTCCGCATCTTGAAAAAAGTTAGATATGTAGTCAGATGGTAGGAGAGAACGAGCTTCAGTTGAAGTGAATGTCATATGCTCCAACACTATTGTACTTGGTGTTGTATGCAACAGGTATGTATGCTTGCAAAACCAGATTTTTCAGGTTTTTC

Network for GWHGAAZE003961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05033.17	Pre-SET	7	105	3.90E-19
PF00856.29	SET	124	249	2.30E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.022
	SRR3591706	second leaf	28.702
	SRR3591707	mature leaf	28.899
	SRR3591708	Shoot apex	62.578
	SRR3591709	Stem	52.911
	SRR3591710	White floral bud	60.705
	SRR3591711	White flower	63.621
	SRR3591712	Green floral bud	72.979
	SRR3591713	Yellow flower	48.080
SRP173429	SRR8316895	Juvenile bud stage	33.235
	SRR8316896	Juvenile bud stage	46.472
	SRR8316897	Juvenile bud stage	19.279
	SRR8316894	Third green stage	16.533
	SRR8316900	Third green stage	52.225
	SRR8316901	Third green stage	53.169
	SRR8316898	Complete white stage	16.269
	SRR8316899	Complete white stage	72.068
	SRR8316903	Complete white stage	31.333
	SRR8316902	Silver flowering stage	21.447
	SRR8316904	Silver flowering stage	23.455
	SRR8316905	Silver flowering stage	13.624
	SRR8316906	Gold flowering stage	44.807
	SRR8316907	Gold flowering stage	42.182
	SRR8316908	Gold flowering stage	47.866
SRP132670	SRR6706286	Control	55.575
	SRR6706287	Light intensity 50%	56.102
	SRR6706288	Light intensity 20%	58.242
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.301
	CNS0095593	Slightly white alabastrum(diploid) 2	41.242
	CNS0095594	Slightly white alabastrum(diploid) 3	44.767
	CNS0095595	Whole white alabastrum(diploid) 2	44.268
	CNS0095596	Whole white alabastrum(diploid) 3	40.797
	CNS0095597	Whole white alabastrum(diploid) 4	40.758
	CNS0095598	Silvery flower (diploied) 1	44.717
	CNS0095599	Silvery flower (diploied) 2	40.040
	CNS0095600	Silvery flower (diploied) 3	59.469
	CNS0095601	Golden flower (diploid) 1	44.446
	CNS0095602	Golden flower (diploid) 2	57.082
	CNS0095603	Golden flower (diploid) 3	57.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.661
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.693
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.455
	CNS0095607	Whole white alabastrum(tetraploid) 1	57.872
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.986
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.460
	CNS0095610	Silvery flower (tetraploid) 1	60.238
	CNS0095611	Silvery flower (tetraploid) 2	72.032
	CNS0095612	Silvery flower (tetraploid) 3	50.670
	CNS0095613	Golden flower (tetraploid) 1	43.633
	CNS0095614	Golden flower (tetraploid) 2	53.624
	CNS0095615	Golden flower (tetraploid) 3	47.706
CRA001975	CRR073297	Stem 1	52.384
	CRR073298	Stem 2	52.170
	CRR073299	Stem 3	60.601
	CRR073300	Leaf 1	54.982
	CRR073301	Leaf 2	55.422
	CRR073302	Leaf 3	48.121
	CRR073303	Juvenile bud 1	56.397
	CRR073304	Juvenile bud 2	38.267
	CRR073305	Juvenile bud 3	69.406
	CRR073306	Third green 1	30.244
	CRR073307	Third green 2	27.286
	CRR073308	Third green 3	32.331
	CRR073309	Second white 1	43.882
	CRR073310	Second white 2	41.368
	CRR073311	Second white 3	38.374
	CRR073312	Silver flowering 1	51.534
	CRR073313	Silver flowering 2	69.921
	CRR073314	Silver flowering 3	57.649
	CRR073315	Gold flowering 1	22.957
	CRR073316	Gold flowering 2	20.077
	CRR073317	Gold flowering 3	25.243
	CRR073318	Tawny withering 1	54.982
	CRR073319	Tawny withering 2	42.680
	CRR073320	Tawny withering 3	43.333