Gene detail

Detail information of GWHGAAZE003963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240614.1	0	PREDICTED: alpha-L-arabinofuranosidase 1-like [Prunus mume]
COG	YP_003573897.1	1E-109	alpha-N-arabinofuranosidase
Swissprot	tr\|Q9SG80\|ASD1_ARATH	0	Alpha-L-arabinofuranosidase 1 (Precursor)
trEMBL	tr\|B2BMP6\|B2BMP6_PRUPE	0	Alpha-L-arabinofuranosidase protein {ECO:0000313\|EMBL:ABV32544.1}
TAIR10	AT3G10740.1	0	alpha-L-arabinofuranosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107910357	107929506	+
GWHAAZE00000001	mRNA	107910357	107929506	+
GWHAAZE00000001	exon	107910357	107910533	+
GWHAAZE00000001	exon	107911579	107911633	+
GWHAAZE00000001	exon	107911874	107912085	+
GWHAAZE00000001	exon	107913069	107913190	+
GWHAAZE00000001	exon	107913281	107913428	+
GWHAAZE00000001	exon	107914170	107914239	+
GWHAAZE00000001	exon	107915744	107915889	+
GWHAAZE00000001	exon	107916262	107916307	+
GWHAAZE00000001	exon	107916416	107916468	+
GWHAAZE00000001	exon	107917277	107917421	+
GWHAAZE00000001	exon	107918253	107918371	+
GWHAAZE00000001	exon	107918507	107918578	+
GWHAAZE00000001	exon	107919280	107919383	+
GWHAAZE00000001	exon	107921373	107921429	+
GWHAAZE00000001	exon	107921530	107921722	+
GWHAAZE00000001	exon	107928649	107928795	+
GWHAAZE00000001	exon	107929492	107929506	+
GWHAAZE00000001	CDS	107910357	107910533	+
GWHAAZE00000001	CDS	107911579	107911633	+
GWHAAZE00000001	CDS	107911874	107912085	+
GWHAAZE00000001	CDS	107913069	107913190	+
GWHAAZE00000001	CDS	107913281	107913428	+
GWHAAZE00000001	CDS	107914170	107914239	+
GWHAAZE00000001	CDS	107915744	107915889	+
GWHAAZE00000001	CDS	107916262	107916307	+
GWHAAZE00000001	CDS	107916416	107916468	+
GWHAAZE00000001	CDS	107917277	107917421	+
GWHAAZE00000001	CDS	107918253	107918371	+
GWHAAZE00000001	CDS	107918507	107918578	+
GWHAAZE00000001	CDS	107919280	107919383	+
GWHAAZE00000001	CDS	107921373	107921429	+
GWHAAZE00000001	CDS	107921530	107921722	+
GWHAAZE00000001	CDS	107928649	107928795	+
GWHAAZE00000001	CDS	107929492	107929506	+

Transcript Sequence
>GWHTAAZE003969 ATGGGTTCAAGCCAATTCCCTTGCACTGTTATGTTTATTTTTTCTGTTGGGTTGTCTGCTTTGTATCAATGTTCTGCCATTGAGGTCGATAAAAACCAGACCGCGTGGTTATATGTAAATGCTTCTCAAGCATCTGCAAGGAATATACCCAAGACTCTTTTCGGCGTATTCTTTGAGGAGATCAACCATGCCGGTGTTGGTGGCTTGTGGGCAGAGCTTGTTAGTAACAGAGGTTTTGAAGCCGGGGGCCAGAATACTCCCTCAAATATAGATCCTTGGTCTATAGTTGGGAATGAATCGCTGCTGAGCGTATCAACGGACCATTCATCATGCTTCGATCGAAATAAAGTTGCACTGCGCATGGAAGTACATTGCAACACCTTGGGAACCAATATCTGTCCAGATGGAGGAGTTGGTATTTATAACCCTGGATTTTGGGGCATGAACATTGAACAAGGGAAGACCTATAAAGTGGTTCTGTACATGCGCTCACTGGGACCAATTAATGTATCTGTATCGTTAACAGACTCAAAGGGGTTACAAACATTGGCTACAGATAGCATTTTAGACGCTGAAGTTTCAAATTGGACAAAGGTGGAGCTTTTATTGAAAGCTAAAGGAACCAATCATAATTCAAGACTGCAGTTGACAACATTCAGAAAAGGAGTACTATGGCTTGATCAAGTGTCGATGATGCCCTTGGATACATACAAGGGGCATGGTTTCCGCAATGATCTTTTCAAAATGCTAGCAGATTTGAAACCAGGATTTATCAGATTTCCAGGTGGCTGTTTCGTTGAAGGTGGTTGGTTACGAAATGCTTTTCGATGGAAAGAAACTATTGGACCATGGGAAGAGAGGCCTGGACATTTTGGTGATGTTTGGAAATACTGGACTGATGATGGACTTGGCCATTTTGAGTTTTTCCAGCTGGCAGAGGACTTGGGTGCGTTGCCAATATGGGTATTCAACAATGGAATCAGTCATAACGATCAAGTTGATCCTTCTAGCGTTTTACCTTTCGTGCAAGAAATCCTCGACGGTATTGAGTTTGCAAGAGGCAATTCTGATTCAACATGGGGATCTGTTCGAGCTGAAATGGGACATCCAGAACCTTTTGATTTGAGATATGTCGCAATTGGCAACGAGGATTGCGGCAAGAAAAATTACCGTGGGAATTATCTGAAGTTCTACTATGCTATAAAACGTGCCTATCCAGATATCAAAATAATTTCGAATTGCGATGGATCTTACAAAAAACTGGATCACCCTGCTGATTTGTATGATTTTCATGTTTATAAAGGAGCAAACAACATGTTCTCACTCGCTCACAATTTTGATCATACATCACGATACGGTCCAAAGGCTTTTGTGAGCGAGTATGCTGTGACTGGAAAAGATGCAGGAACCGGAAGTCTTTTGGCAGCATTGGCTGAAGCTGGATTCCTTATTGGACTTGAAAGGAACAGCGATGTCGTTGAAATGACATGCTACGCACCTCTATTTGTGAATGTCAATGACAGGCGGTGGAACCCAGATGCAATCGTTTTTAACTCTTCACACCTCTATGGAACCCCTAGTTACTGGATGCAACTGTATTTTGTAGAATCAAATGGGGCAACTCTTCTTAATTCAACTCTCAACTCACCAAGCTCCCTTATGGGTTCCGCTATAACTTGGCTGAACCCGGAGGACAACAAGAATTACTTAAGAGTAAAGGTTGTCAACTTTGGGAACACCACGACGAATTTGAAGATTTCAATTGATGGAATGGAGCTTAACTCGAAACAATCAATTAACTCAGCGAAGACTGTACTTACATCTACTAATCTCATGGATGAGAATTCCTTCCAACAGCCACAAAAGAAAGACCAGGAATGA

Network for GWHGAAZE003963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06964.13	Alpha-L-AF_C	460	622	1.30E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01209	abfA	Metabolic pathways	map01100
K01209	abfA	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0046373	biological_process	L-arabinose metabolic process
GO:0046556	molecular_function	alpha-L-arabinofuranosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.757
	SRR3591706	second leaf	2.607
	SRR3591707	mature leaf	0.858
	SRR3591708	Shoot apex	2.487
	SRR3591709	Stem	13.947
	SRR3591710	White floral bud	2.180
	SRR3591711	White flower	1.235
	SRR3591712	Green floral bud	3.263
	SRR3591713	Yellow flower	0.159
SRP173429	SRR8316895	Juvenile bud stage	9.195
	SRR8316896	Juvenile bud stage	5.809
	SRR8316897	Juvenile bud stage	3.181
	SRR8316894	Third green stage	1.874
	SRR8316900	Third green stage	5.301
	SRR8316901	Third green stage	4.694
	SRR8316898	Complete white stage	0.353
	SRR8316899	Complete white stage	0.971
	SRR8316903	Complete white stage	0.379
	SRR8316902	Silver flowering stage	0.206
	SRR8316904	Silver flowering stage	0.310
	SRR8316905	Silver flowering stage	0.120
	SRR8316906	Gold flowering stage	0.936
	SRR8316907	Gold flowering stage	0.185
	SRR8316908	Gold flowering stage	0.761
SRP132670	SRR6706286	Control	2.556
	SRR6706287	Light intensity 50%	2.422
	SRR6706288	Light intensity 20%	2.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.307
	CNS0095593	Slightly white alabastrum(diploid) 2	2.601
	CNS0095594	Slightly white alabastrum(diploid) 3	3.404
	CNS0095595	Whole white alabastrum(diploid) 2	3.631
	CNS0095596	Whole white alabastrum(diploid) 3	2.839
	CNS0095597	Whole white alabastrum(diploid) 4	3.937
	CNS0095598	Silvery flower (diploied) 1	0.293
	CNS0095599	Silvery flower (diploied) 2	0.426
	CNS0095600	Silvery flower (diploied) 3	0.205
	CNS0095601	Golden flower (diploid) 1	0.781
	CNS0095602	Golden flower (diploid) 2	0.380
	CNS0095603	Golden flower (diploid) 3	0.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.721
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.153
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.924
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.353
	CNS0095610	Silvery flower (tetraploid) 1	0.118
	CNS0095611	Silvery flower (tetraploid) 2	0.370
	CNS0095612	Silvery flower (tetraploid) 3	0.133
	CNS0095613	Golden flower (tetraploid) 1	0.021
	CNS0095614	Golden flower (tetraploid) 2	0.167
	CNS0095615	Golden flower (tetraploid) 3	0.310
CRA001975	CRR073297	Stem 1	10.932
	CRR073298	Stem 2	4.352
	CRR073299	Stem 3	2.333
	CRR073300	Leaf 1	1.656
	CRR073301	Leaf 2	1.500
	CRR073302	Leaf 3	1.420
	CRR073303	Juvenile bud 1	0.642
	CRR073304	Juvenile bud 2	0.225
	CRR073305	Juvenile bud 3	0.096
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.031
	CRR073308	Third green 3	0.064
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.268
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.485
	CRR073316	Gold flowering 2	0.266
	CRR073317	Gold flowering 3	0.077
	CRR073318	Tawny withering 1	2.741
	CRR073319	Tawny withering 2	3.135
	CRR073320	Tawny withering 3	5.570