Gene detail

Detail information of GWHGAAZE003965

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278827.1	9.8224E-168	PREDICTED: transcription factor IIIA-like [Vitis vinifera]
COG	YP_004117314.1	0.000009	zinc finger C2H2-type domain-containing protein
Swissprot	tr\|Q2V3L3\|Y4634_ARATH	0.0000002	Uncharacterized zinc finger protein At4g06634
trEMBL	tr\|D7TQ66\|D7TQ66_VITVI	5E-163	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32873.3}
TAIR10	AT1G72050.2	5E-108	transcription factor IIIA

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107982898	107985033	+
GWHAAZE00000001	mRNA	107982898	107985033	+
GWHAAZE00000001	exon	107982898	107983026	+
GWHAAZE00000001	exon	107983633	107983927	+
GWHAAZE00000001	exon	107984079	107984320	+
GWHAAZE00000001	exon	107984451	107984594	+
GWHAAZE00000001	exon	107984851	107985033	+
GWHAAZE00000001	CDS	107982898	107983026	+
GWHAAZE00000001	CDS	107983633	107983927	+
GWHAAZE00000001	CDS	107984079	107984320	+
GWHAAZE00000001	CDS	107984451	107984594	+
GWHAAZE00000001	CDS	107984851	107985033	+

Transcript Sequence
>GWHTAAZE003971 ATGAAAGAGAAACAAGGTGACATAGATGGGGAAAGAGAAGGAGTGAAGTTGAATACATGTGAAGAATGCGGTGCGAGTTTTCGGAAACCTGCTCATTTAAAGCAGCATATGCAAAGCCATTCACTTGAGAGGCCCTTTTCTTGCCTGGTGGATGATTGCCAGTCCAGTTACCGAAGGAAGGACCATTTGAATCGTCACCTTCTTCAGCACCAAGGAAAACTTTTTGAGTGTCCTGTTGATAACTGCAAGAGCAGATTCACTATCCATGGTAACATGAAGAGGCACGTTAATGAATTTCATGATAGTGATGACGAGTCTCCTGCCAGTGATATTGAGGGTCAGAAGCAGTACGTATGTCCGGAAGTTGGGTGTGGAAAGATGTTCAAATATGCATCAAAGCTGCGAAAACACGAAGATTCTCATGTTAAATTGGATACAGTGGAGGTTTTCTGTTCAGAACCTGGGTGTATGAAATATTTTACGAACGAGCAATATCTGAGGGACCACTTACAGTCTTGTCATCAGCATATCACATGCGAGATATGTGGGACCAAGCAGCTGAAGAGGAATATCAAGCGTCATCTTCGTACACACGAACCAGGACCATCAGCTGAGATTGAGAAGATAAAGTGCAGCTACAAGGACTGCACCAGCACATTTTCAACGAATTCAAATCTTCAGCAACACATCAAAGCCGTGCACTTTGAACAGAAACCTTTTTCCTGTAGCATTCCGGGGTGTGGCATGAGATTTTCGTTTAAGCACGTAAGAGATAACCATGAGAAATCTAGTTTCCATCTATATACTCAGGGAGATTTTGAGGAAACTGATGAGCAATTCCGTTCGAGGCCGAGGGGAGGGCGTAAAAGGACGTGCCCGGCTATGGATACCCTTATGCGGAAGAGGATTGTTCCGCCAACTCAATCGGATTCTATCTTGAACGAAGGTCCTGATTATCTATCATGGTTGCTATCAGGTGGGGCCGAGGACTAG

Network for GWHGAAZE003965

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	19	40	7.70E-05
PF00096.27	zf-C2H2	117	141	0.00022
PF00096.27	zf-C2H2	210	234	0.0011

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.659
	SRR3591706	second leaf	9.771
	SRR3591707	mature leaf	8.501
	SRR3591708	Shoot apex	13.894
	SRR3591709	Stem	13.964
	SRR3591710	White floral bud	18.207
	SRR3591711	White flower	15.544
	SRR3591712	Green floral bud	14.761
	SRR3591713	Yellow flower	16.905
SRP173429	SRR8316895	Juvenile bud stage	5.302
	SRR8316896	Juvenile bud stage	8.923
	SRR8316897	Juvenile bud stage	4.031
	SRR8316894	Third green stage	5.066
	SRR8316900	Third green stage	14.774
	SRR8316901	Third green stage	12.868
	SRR8316898	Complete white stage	6.619
	SRR8316899	Complete white stage	19.954
	SRR8316903	Complete white stage	12.477
	SRR8316902	Silver flowering stage	7.833
	SRR8316904	Silver flowering stage	10.841
	SRR8316905	Silver flowering stage	4.742
	SRR8316906	Gold flowering stage	13.952
	SRR8316907	Gold flowering stage	14.613
	SRR8316908	Gold flowering stage	14.638
SRP132670	SRR6706286	Control	12.966
	SRR6706287	Light intensity 50%	14.179
	SRR6706288	Light intensity 20%	14.721
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.121
	CNS0095593	Slightly white alabastrum(diploid) 2	14.349
	CNS0095594	Slightly white alabastrum(diploid) 3	10.809
	CNS0095595	Whole white alabastrum(diploid) 2	9.350
	CNS0095596	Whole white alabastrum(diploid) 3	10.459
	CNS0095597	Whole white alabastrum(diploid) 4	6.100
	CNS0095598	Silvery flower (diploied) 1	9.313
	CNS0095599	Silvery flower (diploied) 2	6.726
	CNS0095600	Silvery flower (diploied) 3	9.252
	CNS0095601	Golden flower (diploid) 1	9.867
	CNS0095602	Golden flower (diploid) 2	8.751
	CNS0095603	Golden flower (diploid) 3	8.374
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.537
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.723
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.873
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.846
	CNS0095610	Silvery flower (tetraploid) 1	14.331
	CNS0095611	Silvery flower (tetraploid) 2	8.231
	CNS0095612	Silvery flower (tetraploid) 3	8.165
	CNS0095613	Golden flower (tetraploid) 1	9.713
	CNS0095614	Golden flower (tetraploid) 2	13.014
	CNS0095615	Golden flower (tetraploid) 3	8.694
CRA001975	CRR073297	Stem 1	19.428
	CRR073298	Stem 2	15.228
	CRR073299	Stem 3	7.753
	CRR073300	Leaf 1	16.734
	CRR073301	Leaf 2	16.417
	CRR073302	Leaf 3	7.491
	CRR073303	Juvenile bud 1	7.181
	CRR073304	Juvenile bud 2	4.338
	CRR073305	Juvenile bud 3	7.877
	CRR073306	Third green 1	0.894
	CRR073307	Third green 2	1.122
	CRR073308	Third green 3	1.581
	CRR073309	Second white 1	0.534
	CRR073310	Second white 2	2.238
	CRR073311	Second white 3	1.266
	CRR073312	Silver flowering 1	1.281
	CRR073313	Silver flowering 2	0.849
	CRR073314	Silver flowering 3	0.654
	CRR073315	Gold flowering 1	5.973
	CRR073316	Gold flowering 2	9.202
	CRR073317	Gold flowering 3	1.682
	CRR073318	Tawny withering 1	13.770
	CRR073319	Tawny withering 2	12.512
	CRR073320	Tawny withering 3	10.924