Detail information of GWHGAAZE003968


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17158.11.42033E-45unnamed protein product [Coffea canephora]
Swissprottr|P0CH30|RING1_GOSHI5E-25E3 ubiquitin-protein ligase RING1
trEMBLtr|A0A068VBV5|A0A068VBV5_COFCA5E-46Coffea canephora DH200=94 genomic scaffold, scaffold_147 {ECO:0000313|EMBL:CDP17158.1}
TAIR10AT2G40830.33E-25RING-H2 finger C1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene108065459108070958+
GWHAAZE00000001mRNA108065459108070958+
GWHAAZE00000001exon108065459108065868+
GWHAAZE00000001exon108070868108070958+
GWHAAZE00000001CDS108065459108065851+
GWHAAZE00000001three_prime_UTR108065852108065868+
GWHAAZE00000001three_prime_UTR108070868108070958+
Transcript Sequence

Network for GWHGAAZE003968

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_220621.60E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.300
SRR3591706second leaf6.656
SRR3591707mature leaf1.861
SRR3591708Shoot apex9.984
SRR3591709Stem4.531
SRR3591710White floral bud2.897
SRR3591711White flower0.707
SRR3591712Green floral bud9.336
SRR3591713Yellow flower0.002
SRP173429 SRR8316895Juvenile bud stage 9.346
SRR8316896Juvenile bud stage 14.128
SRR8316897Juvenile bud stage 4.624
SRR8316894Third green stage 3.250
SRR8316900Third green stage 14.893
SRR8316901Third green stage 10.001
SRR8316898Complete white stage 1.243
SRR8316899Complete white stage 12.025
SRR8316903Complete white stage 3.145
SRR8316902Silver flowering stage0.080
SRR8316904Silver flowering stage0.217
SRR8316905Silver flowering stage0.274
SRR8316906Gold flowering stage 0.181
SRR8316907Gold flowering stage 0.203
SRR8316908Gold flowering stage 0.637
SRP132670SRR6706286Control6.451
SRR6706287Light intensity 50%6.546
SRR6706288Light intensity 20%7.669
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.097
CNS0095593Slightly white alabastrum(diploid) 29.226
CNS0095594Slightly white alabastrum(diploid) 311.764
CNS0095595Whole white alabastrum(diploid) 212.253
CNS0095596Whole white alabastrum(diploid) 312.533
CNS0095597Whole white alabastrum(diploid) 46.505
CNS0095598Silvery flower (diploied) 17.916
CNS0095599Silvery flower (diploied) 26.061
CNS0095600Silvery flower (diploied) 32.096
CNS0095601Golden flower (diploid) 16.767
CNS0095602Golden flower (diploid) 23.531
CNS0095603Golden flower (diploid) 33.244
CNS0095604Slightly white alabastrum(tetraploid) 19.788
CNS0095605Slightly white alabastrum(tetraploid) 29.896
CNS0095606Slightly white alabastrum(tetraploid) 316.619
CNS0095607Whole white alabastrum(tetraploid) 15.420
CNS0095608Whole white alabastrum(tetraploid) 27.427
CNS0095609Whole white alabastrum(tetraploid) 312.824
CNS0095610Silvery flower (tetraploid) 10.505
CNS0095611Silvery flower (tetraploid) 22.676
CNS0095612Silvery flower (tetraploid) 34.260
CNS0095613Golden flower (tetraploid) 10.909
CNS0095614Golden flower (tetraploid) 21.492
CNS0095615Golden flower (tetraploid) 32.013
CRA001975CRR073297Stem 122.047
CRR073298Stem 219.935
CRR073299Stem 322.607
CRR073300Leaf 118.284
CRR073301Leaf 223.260
CRR073302Leaf 328.701
CRR073303Juvenile bud 118.970
CRR073304Juvenile bud 212.482
CRR073305Juvenile bud 315.811
CRR073306Third green 11.016
CRR073307Third green 20.415
CRR073308Third green 32.036
CRR073309Second white 18.474
CRR073310Second white 23.927
CRR073311Second white 35.529
CRR073312Silver flowering 112.532
CRR073313Silver flowering 211.573
CRR073314Silver flowering 38.173
CRR073315Gold flowering 12.134
CRR073316Gold flowering 27.600
CRR073317Gold flowering 34.995
CRR073318Tawny withering 111.345
CRR073319Tawny withering 25.042
CRR073320Tawny withering 314.802