Gene detail

Detail information of GWHGAAZE003979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP41873.1	1.0493E-145	hypothetical protein JCGZ_26891 [Jatropha curcas]
COG	YP_001357554.1	8E-45	histidine biosynthesis bifunctional protein HisI
Swissprot	tr\|O82768\|HIS2_ARATH	7E-133	Phosphoribosyl-ATP pyrophosphatase (Precursor)
trEMBL	tr\|A0A067L3R8\|A0A067L3R8_JATCU	4E-146	Uncharacterized protein {ECO:0000313\|EMBL:KDP41873.1}
TAIR10	AT1G31860.1	1E-100	histidine biosynthesis bifunctional protein (HISIE)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	108374612	108381825	-
GWHAAZE00000001	mRNA	108374612	108381825	-
GWHAAZE00000001	exon	108374612	108374944	-
GWHAAZE00000001	exon	108376984	108377135	-
GWHAAZE00000001	exon	108377516	108377611	-
GWHAAZE00000001	exon	108377985	108378230	-
GWHAAZE00000001	exon	108381658	108381825	-
GWHAAZE00000001	CDS	108381658	108381825	-
GWHAAZE00000001	CDS	108377985	108378230	-
GWHAAZE00000001	CDS	108377516	108377611	-
GWHAAZE00000001	CDS	108376984	108377135	-
GWHAAZE00000001	CDS	108374740	108374944	-
GWHAAZE00000001	three_prime_UTR	108374612	108374739	-

Transcript Sequence
>GWHTAAZE003985 ATGGCAGTAACGTATTTCCATTCCCTTCAATCTCTAAATGTTTCTTCAAGAGGCCGCATTTGCTATTCAGGTGCCCCGTATGGGCGCAGATATGGACTCACCAACAAATTTTACTCTGTTTCTGCCTCCATTGGGAAAAACAGTCAAGATCTTTCCCGTGAATCTAAGATTGATACACTGTTGGACAGTGTGAAATGGGACAACAAAGGCTTAGCGGTGGCCATCGCTCAAAATGTTGACACAGGAGCAATCTTAATGCAAGGATTTGTCAACAAGGATGCCCTTGCTACTACCATTTCCTCAAGGAAGGCTACATTCTATAGTAGGTCTCGATCATCCTTATGGACCAAGGGAGAGACCTCAATGAACTTTATCAATGTTGATAACATATTTCTTGATTGTGATCGTGATTCTATAATATACCTTGGGAAGCCTGATGGGCCCACTTGCCACACTGGGTCGGAGACTTGCTATTACACTTCTGTTTTTGATTTCTTAAATGATTCACAGGTTGAAGGAAATACTTTGGCAATGTCAACTTTGTACTCGTTAGAATCAACTATCAGTCAAAGGAAGGACGAAATCTCACAGCCTGAAAATGGAAAACCTTCGTGGACAAAACGTTTATTGCTTGATGTCAAGTTGCTGTGCTCGAAAATCCGGGAGGAGGCGGATGAGTTGTGTAGAACGCTGGAGGAGAATGAAGAGAGAAAAAGGACTGCATCAGAGATGGGAGATTTACTATATCATGCCTTGGTTTTATTGAATGTAACAGGTGTCAAAGTAGAAGAGGTTCTTGAGGTTCTCAGGCTTAGATTCTCTCAGTCTGGTGTAGAGGAGAAGAAATCTCGCAAACCTCAAGCCTAAAACACACCGAGTCTCTGTGCCAATATTAATTCCAAAAGATTGAGTCATATTTTGAGGCTACTTTATTGCTCAAGTTGGAGATTCTTTTTTTTCTAGTTAAGTTACAATCATTGTCTCTCCATAAATTG

Network for GWHGAAZE003979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01502.19	PRA-CH	86	159	3.70E-27
PF01503.18	PRA-PH	183	269	4.90E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11755	hisIE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Histidine metabolism	map00340

Gene Ontology

GO term	Ontology	Name
GO:0000105	biological_process	histidine biosynthetic process
GO:0004636	molecular_function	phosphoribosyl-ATP diphosphatase activity
GO:0004635	molecular_function	phosphoribosyl-AMP cyclohydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.710
	SRR3591706	second leaf	18.515
	SRR3591707	mature leaf	19.388
	SRR3591708	Shoot apex	29.182
	SRR3591709	Stem	19.884
	SRR3591710	White floral bud	34.602
	SRR3591711	White flower	43.137
	SRR3591712	Green floral bud	30.264
	SRR3591713	Yellow flower	41.058
SRP173429	SRR8316895	Juvenile bud stage	26.431
	SRR8316896	Juvenile bud stage	34.590
	SRR8316897	Juvenile bud stage	16.789
	SRR8316894	Third green stage	15.090
	SRR8316900	Third green stage	49.294
	SRR8316901	Third green stage	45.227
	SRR8316898	Complete white stage	26.671
	SRR8316899	Complete white stage	43.249
	SRR8316903	Complete white stage	32.031
	SRR8316902	Silver flowering stage	20.269
	SRR8316904	Silver flowering stage	33.896
	SRR8316905	Silver flowering stage	14.746
	SRR8316906	Gold flowering stage	45.389
	SRR8316907	Gold flowering stage	50.242
	SRR8316908	Gold flowering stage	47.955
SRP132670	SRR6706286	Control	31.996
	SRR6706287	Light intensity 50%	32.593
	SRR6706288	Light intensity 20%	36.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.282
	CNS0095593	Slightly white alabastrum(diploid) 2	30.665
	CNS0095594	Slightly white alabastrum(diploid) 3	26.001
	CNS0095595	Whole white alabastrum(diploid) 2	30.925
	CNS0095596	Whole white alabastrum(diploid) 3	29.207
	CNS0095597	Whole white alabastrum(diploid) 4	30.530
	CNS0095598	Silvery flower (diploied) 1	26.793
	CNS0095599	Silvery flower (diploied) 2	29.114
	CNS0095600	Silvery flower (diploied) 3	36.892
	CNS0095601	Golden flower (diploid) 1	25.776
	CNS0095602	Golden flower (diploid) 2	33.660
	CNS0095603	Golden flower (diploid) 3	35.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.676
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.852
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.203
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.761
	CNS0095610	Silvery flower (tetraploid) 1	39.458
	CNS0095611	Silvery flower (tetraploid) 2	45.272
	CNS0095612	Silvery flower (tetraploid) 3	66.178
	CNS0095613	Golden flower (tetraploid) 1	42.326
	CNS0095614	Golden flower (tetraploid) 2	34.656
	CNS0095615	Golden flower (tetraploid) 3	34.398
CRA001975	CRR073297	Stem 1	29.352
	CRR073298	Stem 2	24.938
	CRR073299	Stem 3	26.863
	CRR073300	Leaf 1	29.758
	CRR073301	Leaf 2	26.341
	CRR073302	Leaf 3	29.566
	CRR073303	Juvenile bud 1	28.160
	CRR073304	Juvenile bud 2	29.945
	CRR073305	Juvenile bud 3	21.750
	CRR073306	Third green 1	26.827
	CRR073307	Third green 2	29.942
	CRR073308	Third green 3	27.736
	CRR073309	Second white 1	45.255
	CRR073310	Second white 2	48.754
	CRR073311	Second white 3	38.420
	CRR073312	Silver flowering 1	42.640
	CRR073313	Silver flowering 2	34.325
	CRR073314	Silver flowering 3	30.741
	CRR073315	Gold flowering 1	27.986
	CRR073316	Gold flowering 2	27.510
	CRR073317	Gold flowering 3	16.324
	CRR073318	Tawny withering 1	19.210
	CRR073319	Tawny withering 2	22.205
	CRR073320	Tawny withering 3	21.861