Detail information of GWHGAAZE003993


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008227322.12.7412E-178PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Prunus mume]
Swissprottr|Q9FHK9|MD26B_ARATH1E-105Probable mediator of RNA polymerase II transcription subunit 26b
trEMBLtr|M5VPN3|M5VPN3_PRUPE3E-178Uncharacterized protein {ECO:0000313|EMBL:EMJ03252.1}
TAIR10AT5G05140.19E-89Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene108642868108646169-
GWHAAZE00000001mRNA108642868108646169-
GWHAAZE00000001exon108642868108642992-
GWHAAZE00000001exon108643248108643338-
GWHAAZE00000001exon108643434108643765-
GWHAAZE00000001exon108644031108644058-
GWHAAZE00000001exon108644186108644217-
GWHAAZE00000001exon108644425108644477-
GWHAAZE00000001exon108645166108645248-
GWHAAZE00000001exon108645360108645428-
GWHAAZE00000001exon108645594108646169-
GWHAAZE00000001five_prime_UTR108646095108646169-
GWHAAZE00000001CDS108645594108646094-
GWHAAZE00000001CDS108645360108645428-
GWHAAZE00000001CDS108645166108645248-
GWHAAZE00000001CDS108644425108644477-
GWHAAZE00000001CDS108644186108644217-
GWHAAZE00000001CDS108644031108644058-
GWHAAZE00000001CDS108643434108643765-
GWHAAZE00000001CDS108643248108643338-
GWHAAZE00000001CDS108642868108642992-
Transcript Sequence

Network for GWHGAAZE003993

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med261752211.10E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.606
SRR3591706second leaf8.746
SRR3591707mature leaf18.119
SRR3591708Shoot apex12.003
SRR3591709Stem32.493
SRR3591710White floral bud15.449
SRR3591711White flower20.997
SRR3591712Green floral bud6.852
SRR3591713Yellow flower25.716
SRP173429 SRR8316895Juvenile bud stage 23.976
SRR8316896Juvenile bud stage 18.553
SRR8316897Juvenile bud stage 24.978
SRR8316894Third green stage 3.168
SRR8316900Third green stage 8.188
SRR8316901Third green stage 10.394
SRR8316898Complete white stage 5.327
SRR8316899Complete white stage 23.635
SRR8316903Complete white stage 10.419
SRR8316902Silver flowering stage7.033
SRR8316904Silver flowering stage8.510
SRR8316905Silver flowering stage4.361
SRR8316906Gold flowering stage 14.077
SRR8316907Gold flowering stage 16.818
SRR8316908Gold flowering stage 15.390
SRP132670SRR6706286Control11.018
SRR6706287Light intensity 50%10.338
SRR6706288Light intensity 20%7.743
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.156
CNS0095593Slightly white alabastrum(diploid) 214.047
CNS0095594Slightly white alabastrum(diploid) 321.425
CNS0095595Whole white alabastrum(diploid) 212.743
CNS0095596Whole white alabastrum(diploid) 33.588
CNS0095597Whole white alabastrum(diploid) 410.149
CNS0095598Silvery flower (diploied) 137.856
CNS0095599Silvery flower (diploied) 232.754
CNS0095600Silvery flower (diploied) 319.183
CNS0095601Golden flower (diploid) 134.904
CNS0095602Golden flower (diploid) 232.599
CNS0095603Golden flower (diploid) 331.809
CNS0095604Slightly white alabastrum(tetraploid) 13.303
CNS0095605Slightly white alabastrum(tetraploid) 22.376
CNS0095606Slightly white alabastrum(tetraploid) 34.706
CNS0095607Whole white alabastrum(tetraploid) 12.558
CNS0095608Whole white alabastrum(tetraploid) 22.851
CNS0095609Whole white alabastrum(tetraploid) 33.720
CNS0095610Silvery flower (tetraploid) 113.791
CNS0095611Silvery flower (tetraploid) 27.391
CNS0095612Silvery flower (tetraploid) 312.397
CNS0095613Golden flower (tetraploid) 110.494
CNS0095614Golden flower (tetraploid) 28.779
CNS0095615Golden flower (tetraploid) 326.098
CRA001975CRR073297Stem 119.557
CRR073298Stem 217.900
CRR073299Stem 312.570
CRR073300Leaf 115.894
CRR073301Leaf 217.162
CRR073302Leaf 310.470
CRR073303Juvenile bud 18.132
CRR073304Juvenile bud 28.088
CRR073305Juvenile bud 315.493
CRR073306Third green 116.912
CRR073307Third green 28.382
CRR073308Third green 313.956
CRR073309Second white 114.087
CRR073310Second white 225.539
CRR073311Second white 326.617
CRR073312Silver flowering 127.745
CRR073313Silver flowering 217.088
CRR073314Silver flowering 324.954
CRR073315Gold flowering 111.141
CRR073316Gold flowering 221.660
CRR073317Gold flowering 311.147
CRR073318Tawny withering 135.121
CRR073319Tawny withering 264.913
CRR073320Tawny withering 335.678