Detail information of GWHGAAZE003994


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009768303.10PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Nicotiana sylvestris]
COGYP_001820383.19E-35non-specific serine/threonine protein kinase
Swissprottr|Q9FF61|SM3L1_ARATH0Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
trEMBLtr|A0A061EVB2|A0A061EVB2_THECC0DNA/RNA helicase protein {ECO:0000313|EMBL:EOY08731.1}
TAIR10AT5G05130.10DNA/RNA helicase protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene108683092108689081-
GWHAAZE00000001mRNA108683092108689081-
GWHAAZE00000001exon108683092108683897-
GWHAAZE00000001exon108685112108685403-
GWHAAZE00000001exon108687184108687487-
GWHAAZE00000001exon108687673108688343-
GWHAAZE00000001exon108688677108689081-
GWHAAZE00000001CDS108688677108689081-
GWHAAZE00000001CDS108687673108688343-
GWHAAZE00000001CDS108687184108687487-
GWHAAZE00000001CDS108685112108685403-
GWHAAZE00000001CDS108683092108683897-
Transcript Sequence

Network for GWHGAAZE003994

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08797.12HIRAN441369.10E-19
PF00176.24SNF2_N2213206.90E-13
PF00176.24SNF2_N3685392.00E-41
PF13920.7zf-C3HC4_35786252.30E-08
PF00271.32Helicase_C6527682.60E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
GO:0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.374
SRR3591706second leaf6.039
SRR3591707mature leaf7.719
SRR3591708Shoot apex12.861
SRR3591709Stem16.540
SRR3591710White floral bud72.315
SRR3591711White flower60.866
SRR3591712Green floral bud25.045
SRR3591713Yellow flower51.166
SRP173429 SRR8316895Juvenile bud stage 7.202
SRR8316896Juvenile bud stage 11.380
SRR8316897Juvenile bud stage 4.328
SRR8316894Third green stage 5.541
SRR8316900Third green stage 13.227
SRR8316901Third green stage 13.326
SRR8316898Complete white stage 10.417
SRR8316899Complete white stage 19.843
SRR8316903Complete white stage 21.025
SRR8316902Silver flowering stage10.197
SRR8316904Silver flowering stage19.156
SRR8316905Silver flowering stage10.780
SRR8316906Gold flowering stage 26.298
SRR8316907Gold flowering stage 27.853
SRR8316908Gold flowering stage 37.187
SRP132670SRR6706286Control16.360
SRR6706287Light intensity 50%16.709
SRR6706288Light intensity 20%15.173
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.616
CNS0095593Slightly white alabastrum(diploid) 210.617
CNS0095594Slightly white alabastrum(diploid) 37.985
CNS0095595Whole white alabastrum(diploid) 27.600
CNS0095596Whole white alabastrum(diploid) 36.219
CNS0095597Whole white alabastrum(diploid) 46.366
CNS0095598Silvery flower (diploied) 111.809
CNS0095599Silvery flower (diploied) 210.797
CNS0095600Silvery flower (diploied) 326.753
CNS0095601Golden flower (diploid) 19.137
CNS0095602Golden flower (diploid) 222.294
CNS0095603Golden flower (diploid) 321.049
CNS0095604Slightly white alabastrum(tetraploid) 19.878
CNS0095605Slightly white alabastrum(tetraploid) 28.898
CNS0095606Slightly white alabastrum(tetraploid) 319.144
CNS0095607Whole white alabastrum(tetraploid) 17.146
CNS0095608Whole white alabastrum(tetraploid) 23.986
CNS0095609Whole white alabastrum(tetraploid) 39.290
CNS0095610Silvery flower (tetraploid) 135.341
CNS0095611Silvery flower (tetraploid) 229.747
CNS0095612Silvery flower (tetraploid) 331.477
CNS0095613Golden flower (tetraploid) 127.531
CNS0095614Golden flower (tetraploid) 239.684
CNS0095615Golden flower (tetraploid) 332.081
CRA001975CRR073297Stem 115.148
CRR073298Stem 214.252
CRR073299Stem 311.337
CRR073300Leaf 117.296
CRR073301Leaf 218.789
CRR073302Leaf 38.807
CRR073303Juvenile bud 115.283
CRR073304Juvenile bud 29.141
CRR073305Juvenile bud 318.883
CRR073306Third green 114.317
CRR073307Third green 211.090
CRR073308Third green 313.798
CRR073309Second white 116.168
CRR073310Second white 211.357
CRR073311Second white 312.190
CRR073312Silver flowering 113.539
CRR073313Silver flowering 215.865
CRR073314Silver flowering 313.027
CRR073315Gold flowering 13.991
CRR073316Gold flowering 25.671
CRR073317Gold flowering 34.831
CRR073318Tawny withering 111.386
CRR073319Tawny withering 29.554
CRR073320Tawny withering 310.357