Gene detail

Detail information of GWHGAAZE004010

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006348033.1	PREDICTED: protein SMG7-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|A9QM73\|SMG7_ARATH	Protein SMG7
trEMBL	tr\|M1AZI2\|M1AZI2_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400033696}
TAIR10	AT5G19400.3	Telomerase activating protein Est1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	109295811	109301894	+
GWHAAZE00000001	mRNA	109295811	109301894	+
GWHAAZE00000001	exon	109295811	109295879	+
GWHAAZE00000001	exon	109296767	109297369	+
GWHAAZE00000001	exon	109297670	109297792	+
GWHAAZE00000001	exon	109298296	109298528	+
GWHAAZE00000001	exon	109298631	109300435	+
GWHAAZE00000001	exon	109300879	109300947	+
GWHAAZE00000001	exon	109301737	109301894	+
GWHAAZE00000001	CDS	109295811	109295879	+
GWHAAZE00000001	CDS	109296767	109297369	+
GWHAAZE00000001	CDS	109297670	109297792	+
GWHAAZE00000001	CDS	109298296	109298528	+
GWHAAZE00000001	CDS	109298631	109300435	+
GWHAAZE00000001	CDS	109300879	109300947	+
GWHAAZE00000001	CDS	109301737	109301894	+

Transcript Sequence
>GWHTAAZE004016 ATGACTATTCCGATGGATAATAATTCGGATAATTTCTCAAGGGAGCGTGTTCAACGCCTTTACAACAAGAATGTTGAATTGGAGAATAGGCGTAGGAAAGCAGCACAAGCTAGAATCCCCTCGGATCCTAATTCGTGGCAACAGATGCGAGAGAACTACGAAGCTATTGTCCTTGAAGACCATGCTTTCTCTGAACAGCACGAAATAGAGTACGCTTTGTGGCAGTTGCACTACAGGCGAATCGAGGAGCTACGTGCTCACTTTAATGCTGCTGTATCATCAGCTGCGTCTCAGAACGGGAAAGGTCCCACTCGACCTGGACCTGATCGTGTGGCCAAGATTCGTTCTCAATTTAAGACCTTTCTATCCGAAGCAACTGGATTTTATCACGATTTGATGGTGAAAATTAGGGCTAAGTATGGCTTGCCACTGAGTTATTTCTCAGATGATCCGGGGTATCAGAATGGCTTTTCTAAGGATGGAAATAAATCTGTCGAGGTGAAGAAAGGCTTGATCTCTTGCCATCGTTGTTTGATCTATCTAGGGGACCTTGCTCGGTATAAAGGCTTATACGGCGAGGGCGATTCTAAAGCTCGAGATTTTGCGGCAGCATCAAGTTACTATCTTCAAGCTTCTTCGCTTTGGCCTTCAAGTGGCAACCCTCATCATCAGCTTGCAATACTTGCATCGTACTCGGGGGACGAATTGGTGGCAGTTTACCGATATTTTCGAAGTCTGGCGGTTGATAACCCTTTTACCACTGCAAGGGATAACTTGATCATTGCATTTGAGAAGAACCGTCAGACTTACTCCCAGTTTCTTGGAGATGCCAAAGCTGCCTCTGTCAAGCCTGCACCTGTGAGGATGACCGGGAAAGGAAGAGGTAAAGGTGAAATAAGGCTTCCAAGTAAAGATAGTAAAGCAGAAGGAAGTCCTGTTAAGGAAGGAGTTTCCATTATACCCGAAATTTCTAAAGCCTTTGGCATTCGCTTTGTACGACTAAATGGCATTCTTTTCACTCGCACAAGTTTGGAGACTTTTGGGGAAGTTTTTGCTTTGGCCAAAAGTGATTTGCTTGAGCTTTTATCTTCCGGGCCAGATGAACAATACAATTTTGGGTCAAATGCTGCCGAGTGTGGGCTTTTGATTATTAGGCTTGTGGCAATTCTGGTATTCACTGTACACAATGTGAATAGGGAAACTGAAAACCAGTCGTACGCTGAAATTTTACAACGGTCTGTTGTCCTTAAAAATGCATTTACAGCTATCTTCGAGTTTATTGGCCACATTCTCGAGAGGTGCACCCAACTGACAGACCCTTCAGCAAGCTATTTCTTGCCGGGCATCTTGATTTTCGTGGAGTGGTTAGCATGCCGTCAGGATATTGTGGCCAACATGGAAATTGAGGAGAGAGAAGCCAATTCTAGATCCTTTTTTTGGAACCGTTGTGTCACCTTTTTCAACCGACTAATTACAAGTGGGTTCATGTTTGGTAACGAGGATGAAGACGAAGCTTGTTTTTTCAATATGAGCAGGTACGAGGAAGGTGAAACCACCAACCAGATCGCGTTGCCCGAGGACTTTGAATTGAGAGGGTTCACACCTCTTCTTCCCGCACAGCTCATTCTTGATTTTTCGAGGAAGCATTCTTTTGGAAGCGATGGTGGCAATAAGGAGAAGAAAGCCCGTATTCAGAGGATTATAGCAGCTGGAAAGGCACTTGCGAATTCTGTTAGGGTTGGACAGCAGAGGTTCTATTTTGATTCCAAGTTGAAGAGGTTTATGATTGGTGTTGAGCCCCAAATTTCTGACGATTATCCTCTTGCCAATTCTTCGGAAGTGCCCACGTTAAATGCACAATTGTATGTAGAAGGAGAAGAAGAAGATGAGGTGATTCTTTTTAAACCATCTGTCACTGAAAAGACTGCAGATGTGATTCCTTCAAACTTTACTTCTTCCGAGCTTCTTGGATCTGGTGTTGATGCACCCACAGTGGATGCGGTGAACATCAATGGATCGGTTTCTGCTCCACACGATGGTTTTGTTTTACAGAATTCTCTTGATAATGGTACCAGGCCACCTCTATCGCTCTCCGAGATTAGTGCCCAATATCTACAACCGCTCCAACAAAATACTTCGAAGTGGCTAGCAGACGAACCAGGATCCCTTATGAATGGGTTTGCTGATTTAAATGTGTTTGAGAATGGCTATTTTCAGCCTGCTGCTGTTACAGTTCCTTTCCCTCAGACTATCGGTCTAGGTGGGGGTAATCGATATCCTTTCCGGGTTTCTGAAACTGTAGTACCGTCTAATTTTGATTCAGTTATGTCTTCATCGGGTGGTATTGATACCGTGTACGTGAAGCCTCTGTCTGCCACGTCAGGGGGCTCGAAAAAGAATCCGGTTAGTCGACCCATCAGGCACTTTGGTCCCCCACCCGGGTTCAACAATGTTCCACCCAAACCGCTGGATGACTCGCTATCCGGTTTAACTTTGAATACTCTGAACCCACCGTTGGATGATTATAGCTGGTTAGATGGACATACGTTTCCATCATTGACAAAACCCACTGGGTTCAACAGTTCCGTTAATCACTCAGTGCCTGTTTACCAACCTGTAAACAAGAGCAATGACCCGGCGGGGATGGTTAGCTTCCCTTTTCCAGGGAAACAGGTTTCAACATTGCAAGCGCAAATGGAGAACCAGAATGGAGGGAAGGACTACCAGTTTTCTGAGCATTTGAAGCTGTACCAGGAGCAGCAGCAACTTCAGAATGGAAACCAACAGTCTGTTGCAGTGCCACAGCAGTATCAAGGACAGCCTCTTTGGGAAGGTTCTGAACAATCTACTGTGGTGGAGATCCAGTGGCCTTGTTGCTACCAGTTAAGCCATCGTGTTAGCGCTTGTGCCGAGCTTTCCACAGATCGAATGAACAGTGATGAAGAAGTCAATAGGTGCAGCCAGTGGGGAAGTTTTTTGAGTTTCAAGTACCTTTGTTGGATCAGTTTGGACTATGCAATCCGTACGGAGCTACTATATCTGATTGCGGTGCGCAACTAA

Network for GWHGAAZE004010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10374.10	EST1	69	191	3.00E-17
PF10373.10	EST1_DNA_bind	204	538	4.20E-60

Protein Sequence

>GWHPAAZE004013
MTIPMDNNSDNFSRERVQRLYNKNVELENRRRKAAQARIPSDPNSWQQMRENYEAIVLEDHAFSEQHEIEYALWQLHYRRIEELRAHFNAAVSSAASQNGKGPTRPGPDRVAKIRSQFKTFLSEATGFYHDLMVKIRAKYGLPLSYFSDDPGYQNGFSKDGNKSVEVKKGLISCHRCLIYLGDLARYKGLYGEGDSKARDFAAASSYYLQASSLWPSSGNPHHQLAILASYSGDELVAVYRYFRSLAVDNPFTTARDNLIIAFEKNRQTYSQFLGDAKAASVKPAPVRMTGKGRGKGEIRLPSKDSKAEGSPVKEGVSIIPEISKAFGIRFVRLNGILFTRTSLETFGEVFALAKSDLLELLSSGPDEQYNFGSNAAECGLLIIRLVAILVFTVHNVNRETENQSYAEILQRSVVLKNAFTAIFEFIGHILERCTQLTDPSASYFLPGILIFVEWLACRQDIVANMEIEEREANSRSFFWNRCVTFFNRLITSGFMFGNEDEDEACFFNMSRYEEGETTNQIALPEDFELRGFTPLLPAQLILDFSRKHSFGSDGGNKEKKARIQRIIAAGKALANSVRVGQQRFYFDSKLKRFMIGVEPQISDDYPLANSSEVPTLNAQLYVEGEEEDEVILFKPSVTEKTADVIPSNFTSSELLGSGVDAPTVDAVNINGSVSAPHDGFVLQNSLDNGTRPPLSLSEISAQYLQPLQQNTSKWLADEPGSLMNGFADLNVFENGYFQPAAVTVPFPQTIGLGGGNRYPFRVSETVVPSNFDSVMSSSGGIDTVYVKPLSATSGGSKKNPVSRPIRHFGPPPGFNNVPPKPLDDSLSGLTLNTLNPPLDDYSWLDGHTFPSLTKPTGFNSSVNHSVPVYQPVNKSNDPAGMVSFPFPGKQVSTLQAQMENQNGGKDYQFSEHLKLYQEQQQLQNGNQQSVAVPQQYQGQPLWEGSEQSTVVEIQWPCCYQLSHRVSACAELSTDRMNSDEEVNRCSQWGSFLSFKYLCWISLDYAIRTELLYLIAVRN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14409	SMG7, EST1C	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.614
	SRR3591706	second leaf	30.119
	SRR3591707	mature leaf	55.088
	SRR3591708	Shoot apex	34.791
	SRR3591709	Stem	66.380
	SRR3591710	White floral bud	75.945
	SRR3591711	White flower	98.151
	SRR3591712	Green floral bud	53.233
	SRR3591713	Yellow flower	97.763
SRP173429	SRR8316895	Juvenile bud stage	25.370
	SRR8316896	Juvenile bud stage	31.166
	SRR8316897	Juvenile bud stage	14.131
	SRR8316894	Third green stage	17.562
	SRR8316900	Third green stage	40.194
	SRR8316901	Third green stage	43.291
	SRR8316898	Complete white stage	29.349
	SRR8316899	Complete white stage	73.402
	SRR8316903	Complete white stage	54.975
	SRR8316902	Silver flowering stage	37.776
	SRR8316904	Silver flowering stage	50.149
	SRR8316905	Silver flowering stage	22.946
	SRR8316906	Gold flowering stage	74.911
	SRR8316907	Gold flowering stage	70.394
	SRR8316908	Gold flowering stage	81.196
SRP132670	SRR6706286	Control	67.522
	SRR6706287	Light intensity 50%	64.546
	SRR6706288	Light intensity 20%	66.418
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.328
	CNS0095593	Slightly white alabastrum(diploid) 2	18.049
	CNS0095594	Slightly white alabastrum(diploid) 3	18.563
	CNS0095595	Whole white alabastrum(diploid) 2	16.902
	CNS0095596	Whole white alabastrum(diploid) 3	15.975
	CNS0095597	Whole white alabastrum(diploid) 4	17.576
	CNS0095598	Silvery flower (diploied) 1	35.744
	CNS0095599	Silvery flower (diploied) 2	23.454
	CNS0095600	Silvery flower (diploied) 3	80.212
	CNS0095601	Golden flower (diploid) 1	23.938
	CNS0095602	Golden flower (diploid) 2	74.564
	CNS0095603	Golden flower (diploid) 3	76.737
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.543
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.594
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.396
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.727
	CNS0095610	Silvery flower (tetraploid) 1	75.390
	CNS0095611	Silvery flower (tetraploid) 2	69.064
	CNS0095612	Silvery flower (tetraploid) 3	84.078
	CNS0095613	Golden flower (tetraploid) 1	42.284
	CNS0095614	Golden flower (tetraploid) 2	66.359
	CNS0095615	Golden flower (tetraploid) 3	113.603
CRA001975	CRR073297	Stem 1	48.882
	CRR073298	Stem 2	45.321
	CRR073299	Stem 3	37.911
	CRR073300	Leaf 1	60.198
	CRR073301	Leaf 2	52.870
	CRR073302	Leaf 3	40.823
	CRR073303	Juvenile bud 1	43.856
	CRR073304	Juvenile bud 2	39.311
	CRR073305	Juvenile bud 3	64.406
	CRR073306	Third green 1	44.277
	CRR073307	Third green 2	36.363
	CRR073308	Third green 3	45.597
	CRR073309	Second white 1	32.296
	CRR073310	Second white 2	48.243
	CRR073311	Second white 3	63.108
	CRR073312	Silver flowering 1	63.030
	CRR073313	Silver flowering 2	58.257
	CRR073314	Silver flowering 3	60.070
	CRR073315	Gold flowering 1	22.210
	CRR073316	Gold flowering 2	39.532
	CRR073317	Gold flowering 3	18.462
	CRR073318	Tawny withering 1	46.555
	CRR073319	Tawny withering 2	43.779
	CRR073320	Tawny withering 3	39.889