Gene detail

Detail information of GWHGAAZE004021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593446.1	1.66623E-68	PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	2E-28	F-box protein At3g07870
trEMBL	tr\|M1BL23\|M1BL23_SOLTU	7E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047592}
TAIR10	AT3G07870.1	6E-26	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	109528591	109530186	+
GWHAAZE00000001	mRNA	109528591	109530186	+
GWHAAZE00000001	exon	109528591	109529730	+
GWHAAZE00000001	exon	109530173	109530186	+
GWHAAZE00000001	five_prime_UTR	109528591	109528601	+
GWHAAZE00000001	CDS	109528602	109529730	+
GWHAAZE00000001	CDS	109530173	109530186	+

Transcript Sequence
>GWHTAAZE004027 ATCAATAGAAAATGTTGATATTGCCGAATTGCTGTCTACCTGAAGGTATAATGGTAGACATACTTTCGAGACTTCCGGTCAAATCGTTGCTACGATTCAGGTCCGTTTGCAAGCCATGGTACGTGCTACTCACAAGCCCTGATTTCATCACTATGCAACTCCATCAAACCAATGGCAATAAGCTTCTCACTGAGAGCGACCTTTTGCTTAATTACAATTGGTACATCGTCCCTGCACTCTATGTCTACAATCGTGACGATAAAACTTCCTTTGATTTACCTTTGCATTTATTTCCATTTAGTAGTAGTAATTTTGTTCAAATTGTGGGTACGTGTAACGGGTTGATATGTGCTCAAGGGATGATTAATCGCAACCTGGCCCTAGTTATATGGAACCCTGCAACCAGGCAGTTTAGGTATCTTGACCCACACCGGGATATTTTGATCCCGTCTAGTTTATTTGTTGGGTTTGGATTTCTTGTAGATACCAATGACTACAAGGTTGTGGTATTTCGGTCTTCCTATAAGTTGGCCTCGGGTAGAATTATGGTTTTTGTGTATACCTTTAGTACAGATTCATGGAGAGCAATGGAGGTTGTTGCGCCAGTTTCGAGGTTTCGTAGTAGGGCGATTACCTTGAATGGGGTTTTCTATTGGATAGAGTGTGTATCGAATAACATGGAGATTATTGTTTCATTTGATTTGCGTGATGAGGTGTTTGGACAGATGACAGTGCCAGATTCTTGTGGTTTCGATGATGAAACTAAAAGCAAGCTTGTTGTTCTAAAGGGATCGCTCGCTGTGATTTTTCATTCGAAGAAGGAAGAGAATGATAGATGCTTTGAGATATGGGTGATGACTGACCAAGGTGTTGAGGAGTCATGGACAAGACTCTTTACTGTTGGCCCGTTTTTGGGCATAGTTGAGCCAGTGGGATCTTGGAAAAATGGCGAGCTTATTTTTCGGTACCCGAAATCTCGTTCAAATGTGTTGTTCTCGTATGATCCTTGTACCCTAGAAATTGAGTATTTTGCAGTTCCGGAGGCCAGGGGCTTGATCAGAGCATTTAATTATGTTGAGAGCCTCGAATTTGTCAATGGAGGGAACAAAAGGAGTTCCACAAGATCTACGATGACAAGAGGTGGGAATGGTTAG

Network for GWHGAAZE004021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	7	45	1.90E-07
PF08268.13	FBA_3	207	294	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.230
	SRR3591711	White flower	1.859
	SRR3591712	Green floral bud	1.823
	SRR3591713	Yellow flower	1.298
SRP173429	SRR8316895	Juvenile bud stage	0.591
	SRR8316896	Juvenile bud stage	0.340
	SRR8316897	Juvenile bud stage	0.186
	SRR8316894	Third green stage	0.512
	SRR8316900	Third green stage	1.936
	SRR8316901	Third green stage	0.669
	SRR8316898	Complete white stage	0.613
	SRR8316899	Complete white stage	1.316
	SRR8316903	Complete white stage	0.709
	SRR8316902	Silver flowering stage	0.506
	SRR8316904	Silver flowering stage	0.471
	SRR8316905	Silver flowering stage	0.219
	SRR8316906	Gold flowering stage	0.709
	SRR8316907	Gold flowering stage	0.615
	SRR8316908	Gold flowering stage	0.445
SRP132670	SRR6706286	Control	0.972
	SRR6706287	Light intensity 50%	1.512
	SRR6706288	Light intensity 20%	1.474
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.310
	CNS0095593	Slightly white alabastrum(diploid) 2	0.079
	CNS0095594	Slightly white alabastrum(diploid) 3	0.486
	CNS0095595	Whole white alabastrum(diploid) 2	0.251
	CNS0095596	Whole white alabastrum(diploid) 3	0.511
	CNS0095597	Whole white alabastrum(diploid) 4	0.070
	CNS0095598	Silvery flower (diploied) 1	0.752
	CNS0095599	Silvery flower (diploied) 2	0.285
	CNS0095600	Silvery flower (diploied) 3	0.986
	CNS0095601	Golden flower (diploid) 1	0.361
	CNS0095602	Golden flower (diploid) 2	0.493
	CNS0095603	Golden flower (diploid) 3	0.395
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.525
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.533
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.592
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.990
	CNS0095610	Silvery flower (tetraploid) 1	1.078
	CNS0095611	Silvery flower (tetraploid) 2	1.186
	CNS0095612	Silvery flower (tetraploid) 3	0.440
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.367
	CNS0095615	Golden flower (tetraploid) 3	0.197
CRA001975	CRR073297	Stem 1	1.273
	CRR073298	Stem 2	1.237
	CRR073299	Stem 3	1.399
	CRR073300	Leaf 1	2.245
	CRR073301	Leaf 2	1.996
	CRR073302	Leaf 3	2.398
	CRR073303	Juvenile bud 1	2.516
	CRR073304	Juvenile bud 2	2.112
	CRR073305	Juvenile bud 3	1.428
	CRR073306	Third green 1	0.254
	CRR073307	Third green 2	0.220
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.146
	CRR073310	Second white 2	0.311
	CRR073311	Second white 3	0.068
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.092
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.291
	CRR073316	Gold flowering 2	1.387
	CRR073317	Gold flowering 3	0.333
	CRR073318	Tawny withering 1	0.223
	CRR073319	Tawny withering 2	0.343
	CRR073320	Tawny withering 3	0.426