Detail information of GWHGAAZE004030


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009593447.13.31877E-10PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X2 [Nicotiana tomentosiformis]
TAIR10AT4G19930.10.0008F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene109664292109664952-
GWHAAZE00000001mRNA109664292109664952-
GWHAAZE00000001exon109664852109664952-
GWHAAZE00000001exon109664557109664692-
GWHAAZE00000001exon109664292109664468-
GWHAAZE00000001CDS109664852109664952-
GWHAAZE00000001CDS109664557109664692-
GWHAAZE00000001CDS109664292109664468-
Transcript Sequence

Network for GWHGAAZE004030

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box4341.70E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.402
SRR3591706second leaf1.158
SRR3591707mature leaf0.630
SRR3591708Shoot apex1.966
SRR3591709Stem1.145
SRR3591710White floral bud0.994
SRR3591711White flower1.010
SRR3591712Green floral bud0.621
SRR3591713Yellow flower1.426
SRP173429 SRR8316895Juvenile bud stage 0.958
SRR8316896Juvenile bud stage 1.651
SRR8316897Juvenile bud stage 1.093
SRR8316894Third green stage 0.998
SRR8316900Third green stage 2.271
SRR8316901Third green stage 1.497
SRR8316898Complete white stage 0.752
SRR8316899Complete white stage 2.023
SRR8316903Complete white stage 1.817
SRR8316902Silver flowering stage0.904
SRR8316904Silver flowering stage2.060
SRR8316905Silver flowering stage0.820
SRR8316906Gold flowering stage 2.024
SRR8316907Gold flowering stage 1.334
SRR8316908Gold flowering stage 1.470
SRP132670SRR6706286Control0.860
SRR6706287Light intensity 50%0.685
SRR6706288Light intensity 20%0.960
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.150
CNS0095593Slightly white alabastrum(diploid) 20.421
CNS0095594Slightly white alabastrum(diploid) 30.350
CNS0095595Whole white alabastrum(diploid) 20.072
CNS0095596Whole white alabastrum(diploid) 30.541
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 11.924
CNS0095599Silvery flower (diploied) 21.364
CNS0095600Silvery flower (diploied) 31.779
CNS0095601Golden flower (diploid) 10.234
CNS0095602Golden flower (diploid) 20.759
CNS0095603Golden flower (diploid) 31.624
CNS0095604Slightly white alabastrum(tetraploid) 10.638
CNS0095605Slightly white alabastrum(tetraploid) 20.500
CNS0095606Slightly white alabastrum(tetraploid) 33.315
CNS0095607Whole white alabastrum(tetraploid) 10.112
CNS0095608Whole white alabastrum(tetraploid) 20.049
CNS0095609Whole white alabastrum(tetraploid) 31.713
CNS0095610Silvery flower (tetraploid) 11.840
CNS0095611Silvery flower (tetraploid) 21.385
CNS0095612Silvery flower (tetraploid) 30.733
CNS0095613Golden flower (tetraploid) 10.456
CNS0095614Golden flower (tetraploid) 21.392
CNS0095615Golden flower (tetraploid) 31.695
CRA001975CRR073297Stem 10.201
CRR073298Stem 20.738
CRR073299Stem 30.000
CRR073300Leaf 10.495
CRR073301Leaf 20.698
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.001
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.071
CRR073310Second white 20.019
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.536
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.600
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.024