Gene detail

Detail information of GWHGAAZE004036

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004251974.1	5.8952E-114	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Solanum lycopersicum]
COG	YP_183289.1	2E-13	ribosome biogenesis protein
trEMBL	tr\|K4DD94\|K4DD94_SOLLC	2E-114	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g017630.1.1}
TAIR10	AT3G57000.1	7E-83	nucleolar essential protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	109740067	109742402	+
GWHAAZE00000001	mRNA	109740067	109742402	+
GWHAAZE00000001	exon	109740067	109740114	+
GWHAAZE00000001	exon	109740268	109740333	+
GWHAAZE00000001	exon	109740700	109740792	+
GWHAAZE00000001	exon	109741226	109741370	+
GWHAAZE00000001	exon	109741533	109741643	+
GWHAAZE00000001	exon	109742136	109742218	+
GWHAAZE00000001	exon	109742310	109742402	+
GWHAAZE00000001	CDS	109740067	109740114	+
GWHAAZE00000001	CDS	109740268	109740333	+
GWHAAZE00000001	CDS	109740700	109740792	+
GWHAAZE00000001	CDS	109741226	109741370	+
GWHAAZE00000001	CDS	109741533	109741643	+
GWHAAZE00000001	CDS	109742136	109742218	+
GWHAAZE00000001	CDS	109742310	109742402	+

Transcript Sequence
>GWHTAAZE004042 ATGGTGCGGCCTTATACAATGAAAGGGCAGAAGCGTAAGAAGAAGGAGGATAATAAGCCTGGGGTTATTTTCATTCTCGAGAAGGCTTCTTTGGAAGTTGCAAAAGTTGGGAAGACATATCAGCTCTTGAACTCGGATGAGCATGCCAATTTCCTGAAAAGAAATAATCGAAATCCTGCTGATTATAGGCCTGACATTGCTCATCAGGCTATGTTAATGATTTTGGACAGCCCACTAAATAAAGCTGGAAGGTTAAGAGCTCTGTATGTAAGAACAGAGAAAGGTGTTCTTTTTGAAGTTAAACCACATGTTCGTATTCCAAGGACATACAAGCGTTTCTCTGGTATCATGTTGCAACTGCTGCAGAAGCTGAGTATAAGTGCTGTTGGGAAACGTGAAAAGCTTTTACGTGTGATCAAGAACCCTGTAACCCAATATTTGCCCGTCAACTCTCGTAAGATAGGGTTCTCACATAGTTCAGAAAAGCTGGTTGATATAGGCGACTATGTTTCTGCTGCTAGCGATGATGTCAATCTTGTATTTGTGGTTGGTGCAATGGCCCATGGGAAAATTGACAAGGATTACGTCGATGATTTTATATCAAGTAAGCTGATTCTAATTTCTATGCTGTTTGCATAG

Network for GWHGAAZE004036

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03587.15	EMG1	24	201	1.80E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14568	EMG1, NEP1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.458
	SRR3591706	second leaf	21.612
	SRR3591707	mature leaf	15.828
	SRR3591708	Shoot apex	29.625
	SRR3591709	Stem	20.974
	SRR3591710	White floral bud	11.784
	SRR3591711	White flower	16.641
	SRR3591712	Green floral bud	16.963
	SRR3591713	Yellow flower	17.139
SRP173429	SRR8316895	Juvenile bud stage	9.648
	SRR8316896	Juvenile bud stage	13.603
	SRR8316897	Juvenile bud stage	0.581
	SRR8316894	Third green stage	3.691
	SRR8316900	Third green stage	17.756
	SRR8316901	Third green stage	14.723
	SRR8316898	Complete white stage	3.525
	SRR8316899	Complete white stage	20.267
	SRR8316903	Complete white stage	5.933
	SRR8316902	Silver flowering stage	5.308
	SRR8316904	Silver flowering stage	5.745
	SRR8316905	Silver flowering stage	2.183
	SRR8316906	Gold flowering stage	9.931
	SRR8316907	Gold flowering stage	9.613
	SRR8316908	Gold flowering stage	4.210
SRP132670	SRR6706286	Control	3.147
	SRR6706287	Light intensity 50%	4.371
	SRR6706288	Light intensity 20%	3.892
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.115
	CNS0095593	Slightly white alabastrum(diploid) 2	15.189
	CNS0095594	Slightly white alabastrum(diploid) 3	12.910
	CNS0095595	Whole white alabastrum(diploid) 2	7.701
	CNS0095596	Whole white alabastrum(diploid) 3	9.629
	CNS0095597	Whole white alabastrum(diploid) 4	6.431
	CNS0095598	Silvery flower (diploied) 1	11.148
	CNS0095599	Silvery flower (diploied) 2	8.273
	CNS0095600	Silvery flower (diploied) 3	13.619
	CNS0095601	Golden flower (diploid) 1	10.676
	CNS0095602	Golden flower (diploid) 2	12.057
	CNS0095603	Golden flower (diploid) 3	11.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.392
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.182
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.258
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.335
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.710
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.861
	CNS0095610	Silvery flower (tetraploid) 1	15.275
	CNS0095611	Silvery flower (tetraploid) 2	13.206
	CNS0095612	Silvery flower (tetraploid) 3	8.854
	CNS0095613	Golden flower (tetraploid) 1	7.441
	CNS0095614	Golden flower (tetraploid) 2	9.688
	CNS0095615	Golden flower (tetraploid) 3	10.112
CRA001975	CRR073297	Stem 1	5.399
	CRR073298	Stem 2	4.224
	CRR073299	Stem 3	4.037
	CRR073300	Leaf 1	4.859
	CRR073301	Leaf 2	4.306
	CRR073302	Leaf 3	5.295
	CRR073303	Juvenile bud 1	4.765
	CRR073304	Juvenile bud 2	3.063
	CRR073305	Juvenile bud 3	4.460
	CRR073306	Third green 1	1.206
	CRR073307	Third green 2	1.262
	CRR073308	Third green 3	1.657
	CRR073309	Second white 1	2.530
	CRR073310	Second white 2	1.917
	CRR073311	Second white 3	1.220
	CRR073312	Silver flowering 1	1.057
	CRR073313	Silver flowering 2	1.013
	CRR073314	Silver flowering 3	2.862
	CRR073315	Gold flowering 1	2.014
	CRR073316	Gold flowering 2	6.047
	CRR073317	Gold flowering 3	6.278
	CRR073318	Tawny withering 1	4.778
	CRR073319	Tawny withering 2	4.008
	CRR073320	Tawny withering 3	7.246