Gene detail

Detail information of GWHGAAZE004037

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759381.1	2.76135E-61	PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	3E-25	F-box protein At3g07870
trEMBL	tr\|M1BL23\|M1BL23_SOLTU	7E-56	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047592}
TAIR10	AT3G07870.1	2E-23	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	109754956	109758158	+
GWHAAZE00000001	mRNA	109754956	109758158	+
GWHAAZE00000001	exon	109754956	109756099	+
GWHAAZE00000001	exon	109757675	109757974	+
GWHAAZE00000001	exon	109758085	109758158	+
GWHAAZE00000001	five_prime_UTR	109754956	109754970	+
GWHAAZE00000001	CDS	109754971	109756099	+
GWHAAZE00000001	CDS	109757675	109757974	+
GWHAAZE00000001	CDS	109758085	109758158	+

Transcript Sequence
>GWHTAAZE004043 GCAAATCAATAGAAAATGTTGATATTGCCGAATTGCTGTCTACCGGAAGGTATAATGGTAGACATACTTTCGAGACTTCCCGTCAAATCCTTGTTACGATTCAAGTCCGTTTGCAAGCCATGGTACGTGCTACTCACAAGCCCCGATTTCATCACTATGCAACTCCATCAGACCAATGGCAATAAGCTTCTCACCGAGAGCGATCTTTTGCTTAATTACAATTGGTACATCGTCCCTGCACTCTATGTCTATAATCGTGACGATAAAACCTCCTTTGATTTACCTTTGCATTTATTTCCATTCAGTAGTAGTAATTGTGTTAAAATTGTGGGTACGTGCAACGGGTTGATATGTGCACAAGGGATCATTAATCACAACCTGGCCCTGGTTATATGGAACCCTGCAACCAGGCAGTTTAGGTATCTTGACCCACACCGGGATATTTTGCTTCCGTCTAGTTTATTTGTTGGGTTTGGATTTCTTGTAGATACCAACGACTACAAGGTTGTGGTATTTCGGTCTTCCTATAAGTTGGCCTTGGGTGGAATTATGGTTTTTGTGTATACCTTTAGTTCAGATTCATGGAGATTAACAGAGGTTGCTGCACCAATTTCGAGGTTTCATAGTAGGGCAATTACCTTGAACAGGGTTTTCTACTGGATAGAACGCGTATCGAACAAAATGGAGATTATTGTTTCATTTGATTTGCGTGATGAGGTGTTTGGACAGATGACAGTGCCGGATTCTTGTGGTTTCGATGGTGAAACTAAAAGCGAGCTTGTTGTCCTAAAGGGATCGCTCTCTGTGATTTTTTATTCGAAGAAGGAAGAGAATGATAGATGCTTTGAGATATGGGTGATGACTGAACAAGGTGTTGAGGAGTCATGGACAAGACTCTTTACTGTTGGCCCCTTTTTGGGCATAGTTGAGCCAGTGGGATCTTGGAAAAATGGCGAGCTTATTTTTCGGTCCCGGAAAACTCGCTCAAATGTGTTGTTCTCATATGATCCATGCACCCTAGAAATTGAGTATTTTGCAGTTCCGGAGGCCAGGGGCTTGATCAGAGCATTTAATTATGTTGAGAGCCTCGAATTTGTCAATGGAGGGAATAAAAGGAGCTCCACAAGATGCACGATGATAAGAGAGTATGTAAGGATCCAAATGGCATGCGAGAATCCCAGGGATCTCAAGACCCCTAGTAATGATTTTGTCTTGGAATTTGCAATTCCAGGCCCAAAAAACAGCGGCTTGTTACATTGCAGGTTATGCGGGGAACTATTTTACCATGGGAATATTACTGGGTTGAACATACACTTGGCTCATCAGAACACAAGAGGTCCACCGTGCCCTTATGTTTCCAATGATATTGGGGAACAAATGAGGATGCATCTTCAGGTTTTAAATGAGAATCTTTTGAAGAGGCAACAACTGCGTCATCGAAAAACAGTTCCGGGTATTGAAGGAGAAACTGATGATCAAGAAAAGGGGGCAGAAAGAGAAAGTGGCTGCACATATTAG

Network for GWHGAAZE004037

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	7	45	2.90E-06
PF08268.13	FBA_3	208	296	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.156
	SRR3591706	second leaf	0.598
	SRR3591707	mature leaf	0.475
	SRR3591708	Shoot apex	1.688
	SRR3591709	Stem	1.837
	SRR3591710	White floral bud	2.519
	SRR3591711	White flower	3.629
	SRR3591712	Green floral bud	2.879
	SRR3591713	Yellow flower	2.637
SRP173429	SRR8316895	Juvenile bud stage	2.562
	SRR8316896	Juvenile bud stage	4.365
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.660
	SRR8316900	Third green stage	3.457
	SRR8316901	Third green stage	1.742
	SRR8316898	Complete white stage	1.184
	SRR8316899	Complete white stage	3.860
	SRR8316903	Complete white stage	2.938
	SRR8316902	Silver flowering stage	0.669
	SRR8316904	Silver flowering stage	1.544
	SRR8316905	Silver flowering stage	0.406
	SRR8316906	Gold flowering stage	1.189
	SRR8316907	Gold flowering stage	1.578
	SRR8316908	Gold flowering stage	0.228
SRP132670	SRR6706286	Control	1.849
	SRR6706287	Light intensity 50%	2.714
	SRR6706288	Light intensity 20%	2.890
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.247
	CNS0095593	Slightly white alabastrum(diploid) 2	1.135
	CNS0095594	Slightly white alabastrum(diploid) 3	1.633
	CNS0095595	Whole white alabastrum(diploid) 2	1.489
	CNS0095596	Whole white alabastrum(diploid) 3	1.032
	CNS0095597	Whole white alabastrum(diploid) 4	1.820
	CNS0095598	Silvery flower (diploied) 1	2.105
	CNS0095599	Silvery flower (diploied) 2	1.999
	CNS0095600	Silvery flower (diploied) 3	2.029
	CNS0095601	Golden flower (diploid) 1	2.180
	CNS0095602	Golden flower (diploid) 2	2.087
	CNS0095603	Golden flower (diploid) 3	2.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.184
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.026
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.059
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.209
	CNS0095610	Silvery flower (tetraploid) 1	0.233
	CNS0095611	Silvery flower (tetraploid) 2	0.171
	CNS0095612	Silvery flower (tetraploid) 3	0.017
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.033
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.356
	CRR073298	Stem 2	2.983
	CRR073299	Stem 3	0.870
	CRR073300	Leaf 1	3.438
	CRR073301	Leaf 2	2.628
	CRR073302	Leaf 3	0.653
	CRR073303	Juvenile bud 1	1.119
	CRR073304	Juvenile bud 2	1.090
	CRR073305	Juvenile bud 3	0.512
	CRR073306	Third green 1	0.338
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.042
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.013
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.147
	CRR073316	Gold flowering 2	0.064
	CRR073317	Gold flowering 3	0.167
	CRR073318	Tawny withering 1	0.033
	CRR073319	Tawny withering 2	0.630
	CRR073320	Tawny withering 3	0.000