Gene detail

Detail information of GWHGAAZE004044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593446.1	1.80437E-28	PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FZF8\|FB44_ARATH	0.000000003	Putative F-box protein At1g47790
trEMBL	tr\|M1BL23\|M1BL23_SOLTU	1E-27	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047592}
TAIR10	AT3G16210.1	0.000000002	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	109854978	109856105	-
GWHAAZE00000001	mRNA	109854978	109856105	-
GWHAAZE00000001	exon	109854978	109855378	-
GWHAAZE00000001	exon	109855476	109855600	-
GWHAAZE00000001	exon	109855711	109856105	-
GWHAAZE00000001	CDS	109855711	109856105	-
GWHAAZE00000001	CDS	109855476	109855600	-
GWHAAZE00000001	CDS	109854978	109855378	-

Transcript Sequence
>GWHTAAZE004050 ATGCGGCCTAGTTATCTGCCTGAAGATTTGATAGTAGTAGACATACTTTCGAGACTTACAGTCAAATCGTTGTTGAGATTCAGGTCCGTTTCGAAAAGCTGGTATGCCCTAATTACAAACCCTAATTTCATCAGAATTCACCTCTCTCGTACTAATTCGCACAAACTCATCACATTCAGCCACTGTTTAGAGAATTTATACGTTACAAATTGCGACGCTGAACCCTCTGATAACTGTAGTGATAATGTTGTGTGTACTAGTTTACCTGTGAAAGTGTTTCATTTTGATCCTAATGCTTGTGTGAATATTGTCGGTTCGTGTAATGGATTGCTGTGTACACATGGTGTTAAGGAGGAAAGCCAGCTTTTGTGGAACCCTGCAACCAAACAGTTCAGAAAGCGGGATAGCAGTGGAACTACTATTCCGGTTTTATTGTATACCTTGAGTTTGGATTCTTGGAAAACAGTAGAAGTAGCTGTTCCAGATTTGTGTTTTAGTGATAGCACAGTTGGTGTGAACGATTCTTGTGGTTCTGGTCATGAAATTAAAAGGGAACTAGCAGTTCTAAAGGAATCCCTTCGTGTGATTGTATATTCTAAGCGCGGACATATGGATAGAGGTTTTGAGATGGTGATGACTGAATATGGCGTTGAGGATTCTTGGTGTAAGCGCTCCAATGTTGCGCCCTTTTCATATGAAGTTGAGGCTTTGGGATCTTGGAGAAATGGTGGGATTATTTTTCGATACCAAAACTGGTGGTTGGATAAACTGATAGTGTATGATCCTAGTACCCAGAAAACCACGTATTTTCGAGTTTGCACAGGTGTGAACAGAGCTCTTATGTATGTCGAGAGTTTAGAAACTTTTGAGAGAGGGAAGAAACGGTGTTCCCAAACATATAAAGCTGACAGGTATTCTTGA

Network for GWHGAAZE004044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	4	44	4.60E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.895
	SRR3591706	second leaf	0.107
	SRR3591707	mature leaf	0.466
	SRR3591708	Shoot apex	0.820
	SRR3591709	Stem	0.607
	SRR3591710	White floral bud	0.951
	SRR3591711	White flower	1.230
	SRR3591712	Green floral bud	0.772
	SRR3591713	Yellow flower	0.866
SRP173429	SRR8316895	Juvenile bud stage	1.659
	SRR8316896	Juvenile bud stage	0.720
	SRR8316897	Juvenile bud stage	0.273
	SRR8316894	Third green stage	0.451
	SRR8316900	Third green stage	1.358
	SRR8316901	Third green stage	0.677
	SRR8316898	Complete white stage	0.840
	SRR8316899	Complete white stage	0.974
	SRR8316903	Complete white stage	0.355
	SRR8316902	Silver flowering stage	0.393
	SRR8316904	Silver flowering stage	1.338
	SRR8316905	Silver flowering stage	0.400
	SRR8316906	Gold flowering stage	1.203
	SRR8316907	Gold flowering stage	0.981
	SRR8316908	Gold flowering stage	0.873
SRP132670	SRR6706286	Control	0.186
	SRR6706287	Light intensity 50%	0.206
	SRR6706288	Light intensity 20%	0.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.297
	CNS0095593	Slightly white alabastrum(diploid) 2	0.728
	CNS0095594	Slightly white alabastrum(diploid) 3	0.118
	CNS0095595	Whole white alabastrum(diploid) 2	0.181
	CNS0095596	Whole white alabastrum(diploid) 3	0.154
	CNS0095597	Whole white alabastrum(diploid) 4	0.272
	CNS0095598	Silvery flower (diploied) 1	0.813
	CNS0095599	Silvery flower (diploied) 2	0.668
	CNS0095600	Silvery flower (diploied) 3	0.669
	CNS0095601	Golden flower (diploid) 1	0.235
	CNS0095602	Golden flower (diploid) 2	1.072
	CNS0095603	Golden flower (diploid) 3	1.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.521
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.266
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.503
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.197
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.660
	CNS0095610	Silvery flower (tetraploid) 1	0.946
	CNS0095611	Silvery flower (tetraploid) 2	0.712
	CNS0095612	Silvery flower (tetraploid) 3	0.435
	CNS0095613	Golden flower (tetraploid) 1	0.353
	CNS0095614	Golden flower (tetraploid) 2	0.551
	CNS0095615	Golden flower (tetraploid) 3	0.951
CRA001975	CRR073297	Stem 1	0.400
	CRR073298	Stem 2	0.317
	CRR073299	Stem 3	0.013
	CRR073300	Leaf 1	0.585
	CRR073301	Leaf 2	0.469
	CRR073302	Leaf 3	0.009
	CRR073303	Juvenile bud 1	0.010
	CRR073304	Juvenile bud 2	0.148
	CRR073305	Juvenile bud 3	0.026
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.062
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.322
	CRR073310	Second white 2	0.303
	CRR073311	Second white 3	0.077
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.251
	CRR073317	Gold flowering 3	0.235
	CRR073318	Tawny withering 1	0.009
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.031