Detail information of GWHGAAZE004059


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAHM24030.17.7687E-108two-component response regulator [Rosa canina]
COGYP_007060218.12E-15serine phosphatase RsbU, regulator of sigma subunit
Swissprottr|O80366|ARR9_ARATH8E-88Two-component response regulator ARR9
trEMBLtr|A0A059T9P7|A0A059T9P7_ROSCN3E-108Two-component response regulator {ECO:0000313|EMBL:AHM24030.1}
TAIR10AT2G41310.12E-58response regulator 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene110283535110285616+
GWHAAZE00000001mRNA110283535110285616+
GWHAAZE00000001exon110283535110283637+
GWHAAZE00000001exon110283774110283877+
GWHAAZE00000001exon110284206110284283+
GWHAAZE00000001exon110284723110284793+
GWHAAZE00000001exon110285328110285616+
GWHAAZE00000001CDS110283535110283637+
GWHAAZE00000001CDS110283774110283877+
GWHAAZE00000001CDS110284206110284283+
GWHAAZE00000001CDS110284723110284793+
GWHAAZE00000001CDS110285328110285616+
Transcript Sequence

Network for GWHGAAZE004059

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00072.25Response_reg111381.50E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
K14492ARR-A Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0000160biological_processphosphorelay signal transduction system

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.654
SRR3591706second leaf3.560
SRR3591707mature leaf2.215
SRR3591708Shoot apex9.234
SRR3591709Stem37.617
SRR3591710White floral bud18.370
SRR3591711White flower13.556
SRR3591712Green floral bud15.946
SRR3591713Yellow flower4.737
SRP173429 SRR8316895Juvenile bud stage 1.876
SRR8316896Juvenile bud stage 1.905
SRR8316897Juvenile bud stage 0.156
SRR8316894Third green stage 6.565
SRR8316900Third green stage 30.583
SRR8316901Third green stage 21.257
SRR8316898Complete white stage 10.948
SRR8316899Complete white stage 7.322
SRR8316903Complete white stage 17.294
SRR8316902Silver flowering stage3.309
SRR8316904Silver flowering stage4.456
SRR8316905Silver flowering stage1.841
SRR8316906Gold flowering stage 10.295
SRR8316907Gold flowering stage 5.767
SRR8316908Gold flowering stage 7.449
SRP132670SRR6706286Control1.435
SRR6706287Light intensity 50%2.212
SRR6706288Light intensity 20%1.932
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.658
CNS0095593Slightly white alabastrum(diploid) 218.120
CNS0095594Slightly white alabastrum(diploid) 310.005
CNS0095595Whole white alabastrum(diploid) 217.500
CNS0095596Whole white alabastrum(diploid) 316.417
CNS0095597Whole white alabastrum(diploid) 49.056
CNS0095598Silvery flower (diploied) 11.651
CNS0095599Silvery flower (diploied) 21.256
CNS0095600Silvery flower (diploied) 33.901
CNS0095601Golden flower (diploid) 10.900
CNS0095602Golden flower (diploid) 22.808
CNS0095603Golden flower (diploid) 32.487
CNS0095604Slightly white alabastrum(tetraploid) 120.499
CNS0095605Slightly white alabastrum(tetraploid) 213.991
CNS0095606Slightly white alabastrum(tetraploid) 341.872
CNS0095607Whole white alabastrum(tetraploid) 112.664
CNS0095608Whole white alabastrum(tetraploid) 29.161
CNS0095609Whole white alabastrum(tetraploid) 312.289
CNS0095610Silvery flower (tetraploid) 14.377
CNS0095611Silvery flower (tetraploid) 24.120
CNS0095612Silvery flower (tetraploid) 319.191
CNS0095613Golden flower (tetraploid) 115.481
CNS0095614Golden flower (tetraploid) 25.242
CNS0095615Golden flower (tetraploid) 38.202
CRA001975CRR073297Stem 14.840
CRR073298Stem 29.946
CRR073299Stem 30.963
CRR073300Leaf 120.324
CRR073301Leaf 222.071
CRR073302Leaf 39.813
CRR073303Juvenile bud 15.619
CRR073304Juvenile bud 21.404
CRR073305Juvenile bud 31.542
CRR073306Third green 12.111
CRR073307Third green 23.437
CRR073308Third green 32.368
CRR073309Second white 12.598
CRR073310Second white 28.683
CRR073311Second white 37.321
CRR073312Silver flowering 17.683
CRR073313Silver flowering 23.278
CRR073314Silver flowering 38.781
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.423
CRR073317Gold flowering 30.000
CRR073318Tawny withering 13.614
CRR073319Tawny withering 22.412
CRR073320Tawny withering 35.698