Gene detail

Detail information of GWHGAAZE004063

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278590.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
COG	YP_004775215.1	1E-67	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6GSK7\|F6GSK7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43280.1}
TAIR10	AT4G08850.1	0	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	110361137	110364734	-
GWHAAZE00000001	mRNA	110361137	110364734	-
GWHAAZE00000001	exon	110361989	110364734	-
GWHAAZE00000001	exon	110361137	110361462	-
GWHAAZE00000001	CDS	110361989	110364734	-
GWHAAZE00000001	CDS	110361137	110361462	-

Transcript Sequence
>GWHTAAZE004069 ATGGCATCCATTACCAAGGCTATGATCTTCATTTTACTCTCACTTCTTTTTGTCATAACGTTCCTTTCACCAAATGTTGCTTCTAATTCTTCTCGAAAAGAAGCAATGGCTCTCCTTCAATGGAAATCAAGCCTTTTCAGCCAAAACAAGCCCATGCAAACTTCATGGACTCTTCCACCTGATAATGCCACCAAATCTTCTCCACAGTCCAAAACTATCCTAAGCCCATGTTCTTGGCACGGAGTTTCTTGCATAGAAGGGAGCGTAATCCGATTAAACCTTTCAATGATAGGTTTAAAAGGTACGCTTTACAACTTTTCCTTCTCGTCCTTCCCAAATCTCACGTACATTGATCTTGGCCTCAATGAACTCAACGGTACCATTCCACCGGAGATTGGTACACTATCAAAACTCAAGTATCTTGATTTGTCGTTCAATTTTTTTTCGGGTATCATCCCAACAGAGATTTGTTTTTTGAGGAATCTCGAGACCCTTCATTTGGGTGATAATCAACTCACAGGCCCGATTCCTCGAGAGATAGGCCAACTAAATTCTCTCTCCGAGCTTGCATTGTCCAAAAACTTTCTTGAAGGACCTATTCCTTCTTCTATGGGCAATTTGAGAAACCTGAGTTTTTTATATCTCTACGAGAATAAACTTTTAGGTTCTATTCCACCGGAAATGGGAAATCTTGTCAACCTCCTCGAGGTCTGTATGGACTCCAACAATCTCACCGGTCAAATCCCTTCCACTTTTGGAAAGTTGAGTAATCTAACTGTGTTGTATTTGTTCAAAAACCAGTTATTGGGTCCCATTCCCCCAGAAATAGGAACATTGAACTCTCTCGAGTATCTCAGCATTCACACAAACAATCTTACTAGCTCAATCCCTCCGTCTTTGGGCAGTCTATCCTCCCTAAGTCTTCTCCATCTCCACACTAATAAACTGTCAGGTCCCATTCCAGAAGAACTGGGAAATTTGGAGTTCATAACCCGCTTCGACTTGAGCCAGAATCGACTTAGTGGTTCAATTCCTACTTCCCTTGGCAAGTTGAAAAACCTGGAAATTTTGTTCCTTCGCAAGAATAACCTTTCAGGTCGCATCCCACAAGAACTAGGAAACTTGAAACTAGTAGTCCTACAAATAGACGAAAATCAATTATCCGGCTCCTTGCCGGACCAGATTTGTCACAGTGGAAAGCTTGTAAATCTCACTGTAAATAACAACCAACTCACGGGTCACATACCCAAAAGCTTTAGAAACTGCCCAAGTTTATTTAGAGTCCGCTTCGACGGTAACAAGCTCACGGGAAATATATCTGAAGCTTTTGGTGTATACCCAAAATTACAGTTCATGGATATAAGCAATAATGAATTTTACGGGGAGATTTCGGATAATTGGAGTAGATGCAAACAGTTAACAAAGCTGGCAATCACAAAGAACAATCTCACTGGTAGTATACCAGTGGCGCTTGGAAATGCTACTCAACTACGTGAACTTTATCTTTCTTCAAATCATTTAGTTGGTGAGATTCCAAAGGAATTTGGGAAACTGAAGTATTTATTGAAGTTGTTTTTGAGCGATAACCAACTTTCTGGCTCTGTACCTCGAGAACTCGGGTCACTAAAGGAGTTGTTATATCTTGATCTATCAGCGAATAGATTAAGTGGGCCTATACCAGGAGTTCTTGGGGATTGTTTGCATCTGATACATTTGAATTTAAGCAGGAATGAATTTGGCGGGGAAATTCCAATTCAGATCACAAAGTTAGTACAACTGTCGGAGCTCGATTTGAGCCGTAACTCGCTCTCAGGAGTAATTCCATCTCAATTTGGAATTTTGGATGGTAATTTGGTGCATATTGACATATCCTACAATGAGTTGGAGGGTCCATTACCGAACAATAAAGCATTTACGGATGCTTCTATAGAAGAATTACGTGGAAACCGAGGTTTGTGTGGCAATGTGACAGGCTTACAGCCCTGTGAAAATCCTATAAAGGGGTCTAAGCATAATCAGAATAAAAGCAACAAACTTACTCTTATAATCGGACTCCCTCTTTTGGGGGCACTTTTACTTCTCGTTGCATTCATTGGGCTTTTAATTACATATGAGCGAAGAAAGCGAAAAATGGAAGCTAAAAACGCAAGTGAAGAAGATGAAGATTTATTCTTAATGCCAGCGTATGATGGAAGAGTAGTGTATGATGAAATTGTAACATCTACAAAAGATTTCGACATCCAATATTGCATTGGAAAGGGAGGATCTGGAAGCGTTTACAAAGCTCTATTGCCTTCGGGTAATATTGTAGCTGTGAAGAAGCTTCATTTGATATCGGATATGATTGATCGAAAAAGCTTTGTAAACGAGGTAAGAGCTTTGACTGAGATAAAGCACCAAAATATTGTGAAGCTTTATGGGTTTTGCTCACATGCTCAGCGCTCGTTTTTAATATATGAGTACCTTGAAAGAGGTAGCTTAACGTCAATATTGAGCAACGACAGAGAGGCTAAGGAGTTGGATTGGACCAAAAGGATAAATCTCATTAAGGGAGTGGCTCATGCTTTATGCTATATGCACCATGATTGTGCAACGCCAATTGTTCATCGAGACATATCGAGCAAGAACATATTGCTTGATTCTAGGTACGAGGCTAATGTTTCGGATTTCGGGACTGCTAAGTTTTTAAAGCCGGACTCGTCCAATTGGAGCGCGCTTGCAGGCACATGTGGATATGTTGCACCAGAGTTTGCTTACACGATGAACGTAACTGAGAAGTGCGACGTGTATAGTTTTGGAGTGTTGGCACTAGAAGTGATCAAAGGGAAGCATCCCGGTGACTTGATTAATACTATATTATCTTCACCAACCGAGAAGATACATCTGAATGATGTGGTGGACCAACGACTCCCATTTTCCTCGTTCGGAATTGAGGAAGTAGTGGTATCTATCATAATAATGGCGAAAGCATGTCTACATGCCAATCCACAATCAAGGCCAACAATGTATATTGTTTCTCAGTTTTTATCAACTCGAACAACAGGCCTCTCAGAGAGTCTTGTTGACCAATAA

Network for GWHGAAZE004063

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	137	159	0.14
PF00560.34	LRR_1	496	518	0.74
PF00069.26	Pkinase	750	1002	4.30E-44

Protein Sequence

>GWHPAAZE004066
MASITKAMIFILLSLLFVITFLSPNVASNSSRKEAMALLQWKSSLFSQNKPMQTSWTLPPDNATKSSPQSKTILSPCSWHGVSCIEGSVIRLNLSMIGLKGTLYNFSFSSFPNLTYIDLGLNELNGTIPPEIGTLSKLKYLDLSFNFFSGIIPTEICFLRNLETLHLGDNQLTGPIPREIGQLNSLSELALSKNFLEGPIPSSMGNLRNLSFLYLYENKLLGSIPPEMGNLVNLLEVCMDSNNLTGQIPSTFGKLSNLTVLYLFKNQLLGPIPPEIGTLNSLEYLSIHTNNLTSSIPPSLGSLSSLSLLHLHTNKLSGPIPEELGNLEFITRFDLSQNRLSGSIPTSLGKLKNLEILFLRKNNLSGRIPQELGNLKLVVLQIDENQLSGSLPDQICHSGKLVNLTVNNNQLTGHIPKSFRNCPSLFRVRFDGNKLTGNISEAFGVYPKLQFMDISNNEFYGEISDNWSRCKQLTKLAITKNNLTGSIPVALGNATQLRELYLSSNHLVGEIPKEFGKLKYLLKLFLSDNQLSGSVPRELGSLKELLYLDLSANRLSGPIPGVLGDCLHLIHLNLSRNEFGGEIPIQITKLVQLSELDLSRNSLSGVIPSQFGILDGNLVHIDISYNELEGPLPNNKAFTDASIEELRGNRGLCGNVTGLQPCENPIKGSKHNQNKSNKLTLIIGLPLLGALLLLVAFIGLLITYERRKRKMEAKNASEEDEDLFLMPAYDGRVVYDEIVTSTKDFDIQYCIGKGGSGSVYKALLPSGNIVAVKKLHLISDMIDRKSFVNEVRALTEIKHQNIVKLYGFCSHAQRSFLIYEYLERGSLTSILSNDREAKELDWTKRINLIKGVAHALCYMHHDCATPIVHRDISSKNILLDSRYEANVSDFGTAKFLKPDSSNWSALAGTCGYVAPEFAYTMNVTEKCDVYSFGVLALEVIKGKHPGDLINTILSSPTEKIHLNDVVDQRLPFSSFGIEEVVVSIIIMAKACLHANPQSRPTMYIVSQFLSTRTTGLSESLVDQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.047
	SRR3591706	second leaf	0.554
	SRR3591707	mature leaf	0.876
	SRR3591708	Shoot apex	0.560
	SRR3591709	Stem	0.383
	SRR3591710	White floral bud	0.595
	SRR3591711	White flower	0.757
	SRR3591712	Green floral bud	0.442
	SRR3591713	Yellow flower	0.656
SRP173429	SRR8316895	Juvenile bud stage	1.492
	SRR8316896	Juvenile bud stage	2.677
	SRR8316897	Juvenile bud stage	0.896
	SRR8316894	Third green stage	0.773
	SRR8316900	Third green stage	1.429
	SRR8316901	Third green stage	1.598
	SRR8316898	Complete white stage	0.312
	SRR8316899	Complete white stage	1.641
	SRR8316903	Complete white stage	0.643
	SRR8316902	Silver flowering stage	0.295
	SRR8316904	Silver flowering stage	0.456
	SRR8316905	Silver flowering stage	0.266
	SRR8316906	Gold flowering stage	0.806
	SRR8316907	Gold flowering stage	0.633
	SRR8316908	Gold flowering stage	1.011
SRP132670	SRR6706286	Control	0.641
	SRR6706287	Light intensity 50%	0.612
	SRR6706288	Light intensity 20%	0.599
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.130
	CNS0095593	Slightly white alabastrum(diploid) 2	0.839
	CNS0095594	Slightly white alabastrum(diploid) 3	0.693
	CNS0095595	Whole white alabastrum(diploid) 2	0.376
	CNS0095596	Whole white alabastrum(diploid) 3	0.322
	CNS0095597	Whole white alabastrum(diploid) 4	0.412
	CNS0095598	Silvery flower (diploied) 1	0.601
	CNS0095599	Silvery flower (diploied) 2	0.320
	CNS0095600	Silvery flower (diploied) 3	1.031
	CNS0095601	Golden flower (diploid) 1	0.671
	CNS0095602	Golden flower (diploid) 2	0.823
	CNS0095603	Golden flower (diploid) 3	0.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.096
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.682
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.254
	CNS0095610	Silvery flower (tetraploid) 1	2.289
	CNS0095611	Silvery flower (tetraploid) 2	2.135
	CNS0095612	Silvery flower (tetraploid) 3	1.190
	CNS0095613	Golden flower (tetraploid) 1	0.818
	CNS0095614	Golden flower (tetraploid) 2	1.525
	CNS0095615	Golden flower (tetraploid) 3	0.804
CRA001975	CRR073297	Stem 1	0.543
	CRR073298	Stem 2	0.574
	CRR073299	Stem 3	0.016
	CRR073300	Leaf 1	0.785
	CRR073301	Leaf 2	0.894
	CRR073302	Leaf 3	0.041
	CRR073303	Juvenile bud 1	0.053
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.148
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.013
	CRR073309	Second white 1	0.026
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.147
	CRR073313	Silver flowering 2	0.147
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.631
	CRR073316	Gold flowering 2	3.624
	CRR073317	Gold flowering 3	3.165
	CRR073318	Tawny withering 1	2.988
	CRR073319	Tawny withering 2	5.044
	CRR073320	Tawny withering 3	0.300