Gene detail

Detail information of GWHGAAZE004066

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009337416.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
COG	YP_004775215.1	4E-74	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LP24\|Y1571_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|A0A068VCR3\|A0A068VCR3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_259 {ECO:0000313\|EMBL:CDP18620.1}
TAIR10	AT1G35710.1	0	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	110433838	110437721	-
GWHAAZE00000001	mRNA	110433838	110437721	-
GWHAAZE00000001	exon	110434688	110437721	-
GWHAAZE00000001	exon	110433838	110434163	-
GWHAAZE00000001	CDS	110434688	110437721	-
GWHAAZE00000001	CDS	110433838	110434163	-

Transcript Sequence
>GWHTAAZE004072 ATGGCATCCATTACCCAGGCTAGGATCTTCATTTTACTCTCATTTCTTTTTATCATAATCTTCCTTTCACCAAATGTTGCTTCTACTTCTTCTAACAAAGAAGCAATGGCTCTCCTTCAATGGAAATCAAGCCTTTTAAGCCAAAACATGCCCATGCAAACTTCATGGACTCTTCCACCTGATAATGCCACAAATTATTATCCACATTCCAAAAAAAACCTGAGCCCATGTTCTTGGCTTGGAGTTTCTTGCATAGAAGGAAATGTAATCCAATTAAATCTTTCGATGACTGGGTTAAAAGGTATGCTTTACAAATTCTCCTTCTCGTCTTTCCCAAATCTTACATACATTGATCTTGCTCTGAATGAACTCAACGGCACCATTCCGCCAGAGATTGGTACACTATCCAAACTCAAGCATCTTGATTTATCGTCCAATCTTTTTTCGGGTATCATCCCACCAGAGATTTGTTTTTTGAGGAATCTCGAGACCCTTCATTTGGCTGAAAATCAACTCACAGGCCTGATTCCTCGAGAGATTGGCCAACTAAATTCTCTCTCGGAGCTTGCATTGTACAAAAACTTTCTTGAAGGACCTATTCCTTCTTCTATGGGCAATTTGAGCAACTTGACTTCCCTATACCTCTCCGAGAATAAACTTTCAGGTTCTATTCCACCGGAAATGGGAAATCTTGTTAACCTCCTCGAGGTTTATATGGACACCAACAATCTCACTGGTCAAATCCCCTCCACTTTTGGAAAGTTGAGTAATCTAACCGTCTTGCATTTGTTCGAAAACCAGTTACTGGGTCCCATTCCCCCAGAAATAGGGACAATGAACTCTCTTGAGCGTCTCAGCATTGACACAAACAATCTTACTGGCACAATCCCTCCATCTTTGGGCAGTTTATCATCCCTAAGTATTCTTTATCTCTACAATAATAAACTGTCAGGTCCCATTCCAGAAGAACTAGGAAACTTGGTGTCCATAACCGACCTCGATTTGAGCAATAATCGACTTAGTGGTTCAATCCCTTCCACTTTTGGAAAGTTGAGTAATCTAACTGTCTTGCATTTGTTCGAAAACCTGTTATTGGGTCCCATTCCCCCAGAAATAGGGACATTGAACTCTCTCGAGCGTCTCTGCATTCACAAAAACAATCTTACTGGCACAATCCCTTCTTCTTTGGGTAGTCTATCATCCCTAAGTATTCTTTATCTCTACATTAATAAACTGTCAGGTCCCATTCCAGAAGAACTGGGAAACTTGGAGTCCATAACCGAACTCGTTTTGAGCGTGAATCGACTTAATGGTTCAATTCCTACTTCCCTCGGCAAGTTGAAAAACCTAGAAATTTTGTTCCTTTGTGAGAACAATCTTTCGGGTCCCATCCCACGAGAACTAGAAAACTTGAAACTAGTAGTCCTATCAGTAGGCAAAAATCAATTATCTGGCTCCTTGCCAGACCAAATTTGCCTTGGCGGAAAGCTTGTACATCTCAGCGTAAGCCACAACCAACTCTATGGTCACATACCCAAAAGCTTTAAAAATTGCACAAGTTTATCTAGAGTCCGCTTCGACGGTAACAAGCTCGCGGGAAATATATCTGAAGTTTTTGGCATTTACCCGAACTTACAGTACATGGATATAAGCAATAATGAATTTTACGGGGAGATTTCGGATAATTGGAGTAGATGCAAACAGTTAACAATGTTGGCAATCACAAAGAACAATATCACTGGTAGTATACCAGTGGCGTTTGGAAATGCTACTCAACTACGTGAACTTCATCTTTCTTCAAATCATTTAGTTGGCGAGATTCCCAAGGAATTTGGGAAGCTGAAGTATTTACTGAATTTGCTTTTGAGCGATAACCAACTTTCTGGCTTTGTACCTCAAGAACTCGGGTCACTAAGGGAGTTGTTATATCTTGATCTATCAGCGAATAGATTAAATGGGCTTATACCAGGAGCTCTTGGGGGCTGCTCGCATCTAACTCATTTGAATTTAAGCAGGAATGAATTTGGCGGGGAAATTCCAATTCAGATCACGAAGTTAATACAGCTTTCGGAGCTTGATTTGAGCCATAACTCGCTATCGGGAGTAATTCCATCACAATTTGGAAGTTTGGATAGTAATTTGGTGTATATTGACATATCCTACAATGAGTTGGAGGGTCCGTTACCAAACAATAAGGCATTTATGAATGCTTCCATAAAAGAATTACGCGAAAATCGAGGTTTGTGTGGAAATGTTACAGGCTTACAGCCCTGTAAAAATCCTATACAGGGGTCTAAGCATAATCAAAACAAGAGCAACAAACTCGCTCTTATAATTGGACTCCCTCTTTTGGGGGCACTTTTACTTCTCGTTGCATTCATTGGTCTCTTAACCGCATATGAGCGAAGAAAGCGAAAAATGGAAGCTAAAAATGCAGCTAAAGAAGATGAAGATATATTCTCAATGCCAGCGTATGATGGAAAACTAGTATATCATAAAATTGTAACATCTACAAAAGATTTTGACGTCCAATATTGCATTGGAAATGGAGGATCTGGAAGCGTTTACAAAGCTCTATTGCCTTTGGGTAATATTGTAGCAGTGAAGAAACTTCATTCGATATCGGATATGATTGATCGAAAAAGCTTTATAAACGAGGTAAGAGCTTTGACTGAGATAAAGCACCGAAATATTGTGAAGCTCTACGGGTTTTGTTCGCATGCTCGGCACTCATTTTTGATATATGAGTATCTCGAAAGAGGTAGCTTAACGTCGATATTGAGCAACGATAGAGAGGCCAAGGAGCTGGATTGGACCAAAAGGATAAATCTCATTAAGGGAGTGGCTCATGCTTTGTGTTACATGCACCATGATTGTGCAACGCCAATTGTTCATCGAGACATATCGAGCAAGAACATATTGCTTGATTCTGGGTACAAGGCTAGTGTTTCGGATTTCGGGACTGCTAAGTTTTTAAAGCCGGACTCATCCAATTGGAGCGCGCTTGCAGGCACATGTGGATATGTTGCACCAGAGTTTGCTTACACGATGAAGGTAACTGAGAAGTGCGACGTGTATAGTTTTGGAGTGTTGGCACTAGAAGTGATCAAAGGGAAGCATCCCGGTGACTTGATTGATACTATATTATCTTCACCAACCGAGAAGATACAGTTGAATGATGTGGTGGACCAACGACTCCCATTTTCCCCATCCAGAATTGAGAAAGTAGTGGTATCTATCCTAATAGTGGCGAAGACATGTCTACATGCCAATCCACAATCAAGGCCAACAATGTATGACATTTCTCAGTTGTTATTAACTCAAACAACGGGCCTCTCTGAGATTCTTGTTGACCAATAG

Network for GWHGAAZE004066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	84	1.80E-05
PF00560.34	LRR_1	137	159	0.06
PF13855.7	LRR_8	281	340	2.50E-08
PF13855.7	LRR_8	377	436	2.80E-06
PF13855.7	LRR_8	543	603	1.30E-08
PF13855.7	LRR_8	617	674	1.40E-07
PF00560.34	LRR_1	689	710	1.5
PF00069.26	Pkinase	846	1102	9.40E-44

Protein Sequence

>GWHPAAZE004069
MASITQARIFILLSFLFIIIFLSPNVASTSSNKEAMALLQWKSSLLSQNMPMQTSWTLPPDNATNYYPHSKKNLSPCSWLGVSCIEGNVIQLNLSMTGLKGMLYKFSFSSFPNLTYIDLALNELNGTIPPEIGTLSKLKHLDLSSNLFSGIIPPEICFLRNLETLHLAENQLTGLIPREIGQLNSLSELALYKNFLEGPIPSSMGNLSNLTSLYLSENKLSGSIPPEMGNLVNLLEVYMDTNNLTGQIPSTFGKLSNLTVLHLFENQLLGPIPPEIGTMNSLERLSIDTNNLTGTIPPSLGSLSSLSILYLYNNKLSGPIPEELGNLVSITDLDLSNNRLSGSIPSTFGKLSNLTVLHLFENLLLGPIPPEIGTLNSLERLCIHKNNLTGTIPSSLGSLSSLSILYLYINKLSGPIPEELGNLESITELVLSVNRLNGSIPTSLGKLKNLEILFLCENNLSGPIPRELENLKLVVLSVGKNQLSGSLPDQICLGGKLVHLSVSHNQLYGHIPKSFKNCTSLSRVRFDGNKLAGNISEVFGIYPNLQYMDISNNEFYGEISDNWSRCKQLTMLAITKNNITGSIPVAFGNATQLRELHLSSNHLVGEIPKEFGKLKYLLNLLLSDNQLSGFVPQELGSLRELLYLDLSANRLNGLIPGALGGCSHLTHLNLSRNEFGGEIPIQITKLIQLSELDLSHNSLSGVIPSQFGSLDSNLVYIDISYNELEGPLPNNKAFMNASIKELRENRGLCGNVTGLQPCKNPIQGSKHNQNKSNKLALIIGLPLLGALLLLVAFIGLLTAYERRKRKMEAKNAAKEDEDIFSMPAYDGKLVYHKIVTSTKDFDVQYCIGNGGSGSVYKALLPLGNIVAVKKLHSISDMIDRKSFINEVRALTEIKHRNIVKLYGFCSHARHSFLIYEYLERGSLTSILSNDREAKELDWTKRINLIKGVAHALCYMHHDCATPIVHRDISSKNILLDSGYKASVSDFGTAKFLKPDSSNWSALAGTCGYVAPEFAYTMKVTEKCDVYSFGVLALEVIKGKHPGDLIDTILSSPTEKIQLNDVVDQRLPFSPSRIEKVVVSILIVAKTCLHANPQSRPTMYDISQLLLTQTTGLSEILVDQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.056
	SRR3591706	second leaf	0.041
	SRR3591707	mature leaf	0.133
	SRR3591708	Shoot apex	0.033
	SRR3591709	Stem	0.083
	SRR3591710	White floral bud	0.217
	SRR3591711	White flower	0.354
	SRR3591712	Green floral bud	0.226
	SRR3591713	Yellow flower	1.017
SRP173429	SRR8316895	Juvenile bud stage	0.026
	SRR8316896	Juvenile bud stage	0.361
	SRR8316897	Juvenile bud stage	0.102
	SRR8316894	Third green stage	0.241
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.152
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.147
	SRR8316903	Complete white stage	0.089
	SRR8316902	Silver flowering stage	0.252
	SRR8316904	Silver flowering stage	0.604
	SRR8316905	Silver flowering stage	0.194
	SRR8316906	Gold flowering stage	1.486
	SRR8316907	Gold flowering stage	0.788
	SRR8316908	Gold flowering stage	1.555
SRP132670	SRR6706286	Control	0.186
	SRR6706287	Light intensity 50%	0.102
	SRR6706288	Light intensity 20%	0.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.064
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.038
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.305
	CNS0095601	Golden flower (diploid) 1	0.151
	CNS0095602	Golden flower (diploid) 2	0.192
	CNS0095603	Golden flower (diploid) 3	0.151
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.073
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.013
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.117
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.162
	CNS0095613	Golden flower (tetraploid) 1	0.284
	CNS0095614	Golden flower (tetraploid) 2	0.295
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	0.014
	CRR073298	Stem 2	0.039
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.118
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.054
	CRR073306	Third green 1	0.039
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.225
	CRR073311	Second white 3	0.111
	CRR073312	Silver flowering 1	0.637
	CRR073313	Silver flowering 2	0.174
	CRR073314	Silver flowering 3	0.297
	CRR073315	Gold flowering 1	0.004
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.107
	CRR073318	Tawny withering 1	1.650
	CRR073319	Tawny withering 2	1.976
	CRR073320	Tawny withering 3	0.297