Gene detail

Detail information of GWHGAAZE004122

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010040513.1	2.1451E-166	PREDICTED: exopolygalacturonase-like [Eucalyptus grandis]
COG	YP_003391696.1	3E-23	glycoside hydrolase family 28
Swissprot	tr\|P24548\|PGLR_OENOR	2E-168	Exopolygalacturonase (Fragment)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	8E-167	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G14040.1	3E-109	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	111583795	111585133	+
GWHAAZE00000001	mRNA	111583795	111585133	+
GWHAAZE00000001	exon	111583795	111584106	+
GWHAAZE00000001	exon	111584372	111585133	+
GWHAAZE00000001	CDS	111583795	111584106	+
GWHAAZE00000001	CDS	111584372	111585133	+

Transcript Sequence
>GWHTAAZE004128 GCTTTGACAGACGCATGGAAAGCGGCATGCGAAGCTACAGCTCCAAGCACGCTTATGATCCCACCAGAGACATATATGTTAGGTCAAATAACCCTATCAGGTCCTTGCAAGGCTGCAGTGACCATTCAACTGCAGGGTACCCTAAAAGCCCCGGAAGACCCAGCTACATTCAAGGCAGATCAAGAATGGGTTACTTTGCAAAGCATTGACCTTCTCACTCTAACTGGTGGTGGAACCTTAAATGGCCAAGGTGCCACTGCTTGGGGACAAAATGATTGCCACAAAACTGGACAATGTAGTAAACTTCCCATTAATCTGAGCCTCAATTCCATTACTAACTCGCTCATCCAAGGAGTAACTTCCGCAGATAGCAAATTATTTCACGTCAATGTCTTGGGATGTAAGAATTTAACCTTCGTAAACTTTACCATAAGTGCACCCGAAACTAGCAAAAACACTGATGGGATCCACATCGGCCGTTCAAACGGTATCAATATCACCGACTCAAACATAAAAACCGGAGATGATTGCGTGTCCATTGGCGATGGAAGCCAGCAAATTAGTGTCACTAAAGTTACCTGTGGACCTGGCCATGGCATCAGTGTGGGAAGTCTTGGGAGGTACCCTAATGAACAAGACGTGGTTGGAATCACCGTTAAAAATTGCACATTTATCGGTACAATGAATGGCGTTAGAGTGAAAACTTGGCCAGCTTCCCCTCCAGGGATCGCGTCTGACTTGCACTTCGAGGATCTTATCATGGACAATGTTGGTAATCCTGTTCTTATTGATCAAGAGTACTGCCCGTATAATCAGTGCACGCAAAATGTGCCTTCGAAAGTTAAGATTAGTAAAGTTAGTTTTAAGAACATTAGGGGTACTTCGTCTACGCAACTTGCTGTAAAGCTTGTTTGCAGTAAAGGGTTCCCCTGCGAAGGCGTGGAAGTTGGAGATATTGACCTGACATATAGTGGAAAAGAAGGACCTGCCATTAGCCAGTGTGCTAATCTTTCACCAACATTTTCGGGGAAATTGAACCCACCAGAATGCACTGCTCAAGCACCTGCTGCTTAA

Network for GWHGAAZE004122

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	10	338	4.90E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.580
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.498
	SRR3591708	Shoot apex	0.845
	SRR3591709	Stem	3.429
	SRR3591710	White floral bud	379.107
	SRR3591711	White flower	7.635
	SRR3591712	Green floral bud	548.538
	SRR3591713	Yellow flower	2.739
SRP173429	SRR8316895	Juvenile bud stage	70.062
	SRR8316896	Juvenile bud stage	210.702
	SRR8316897	Juvenile bud stage	112.630
	SRR8316894	Third green stage	75.765
	SRR8316900	Third green stage	323.760
	SRR8316901	Third green stage	329.875
	SRR8316898	Complete white stage	0.146
	SRR8316899	Complete white stage	2.489
	SRR8316903	Complete white stage	0.367
	SRR8316902	Silver flowering stage	2.108
	SRR8316904	Silver flowering stage	6.370
	SRR8316905	Silver flowering stage	1.560
	SRR8316906	Gold flowering stage	0.817
	SRR8316907	Gold flowering stage	0.274
	SRR8316908	Gold flowering stage	0.023
SRP132670	SRR6706286	Control	149.466
	SRR6706287	Light intensity 50%	151.088
	SRR6706288	Light intensity 20%	138.543
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	467.434
	CNS0095593	Slightly white alabastrum(diploid) 2	389.051
	CNS0095594	Slightly white alabastrum(diploid) 3	667.262
	CNS0095595	Whole white alabastrum(diploid) 2	787.801
	CNS0095596	Whole white alabastrum(diploid) 3	952.594
	CNS0095597	Whole white alabastrum(diploid) 4	1022.147
	CNS0095598	Silvery flower (diploied) 1	11.671
	CNS0095599	Silvery flower (diploied) 2	40.672
	CNS0095600	Silvery flower (diploied) 3	9.916
	CNS0095601	Golden flower (diploid) 1	8.740
	CNS0095602	Golden flower (diploid) 2	7.105
	CNS0095603	Golden flower (diploid) 3	7.373
	CNS0095604	Slightly white alabastrum(tetraploid) 1	988.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1224.507
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.923
	CNS0095607	Whole white alabastrum(tetraploid) 1	1711.722
	CNS0095608	Whole white alabastrum(tetraploid) 2	1844.497
	CNS0095609	Whole white alabastrum(tetraploid) 3	805.040
	CNS0095610	Silvery flower (tetraploid) 1	3.721
	CNS0095611	Silvery flower (tetraploid) 2	30.334
	CNS0095612	Silvery flower (tetraploid) 3	88.566
	CNS0095613	Golden flower (tetraploid) 1	14.399
	CNS0095614	Golden flower (tetraploid) 2	2.203
	CNS0095615	Golden flower (tetraploid) 3	30.919
CRA001975	CRR073297	Stem 1	109.356
	CRR073298	Stem 2	113.351
	CRR073299	Stem 3	62.426
	CRR073300	Leaf 1	375.718
	CRR073301	Leaf 2	244.007
	CRR073302	Leaf 3	147.652
	CRR073303	Juvenile bud 1	247.333
	CRR073304	Juvenile bud 2	181.272
	CRR073305	Juvenile bud 3	22.530
	CRR073306	Third green 1	176.837
	CRR073307	Third green 2	245.829
	CRR073308	Third green 3	177.729
	CRR073309	Second white 1	12.269
	CRR073310	Second white 2	23.299
	CRR073311	Second white 3	29.987
	CRR073312	Silver flowering 1	142.491
	CRR073313	Silver flowering 2	129.463
	CRR073314	Silver flowering 3	90.007
	CRR073315	Gold flowering 1	174.092
	CRR073316	Gold flowering 2	34.205
	CRR073317	Gold flowering 3	115.796
	CRR073318	Tawny withering 1	138.732
	CRR073319	Tawny withering 2	154.349
	CRR073320	Tawny withering 3	137.042