Gene detail

Detail information of GWHGAAZE004138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009612480.1	1.4448E-174	PREDICTED: polygalacturonase-like [Nicotiana tomentosiformis]
COG	YP_003391696.1	3E-23	glycoside hydrolase family 28
Swissprot	tr\|Q05967\|PGLR_TOBAC	2E-173	Polygalacturonase (Precursor)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	2E-172	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G07820.1	4E-113	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	111935903	111937831	+
GWHAAZE00000001	mRNA	111935903	111937831	+
GWHAAZE00000001	exon	111935903	111936019	+
GWHAAZE00000001	exon	111936472	111936783	+
GWHAAZE00000001	exon	111937058	111937831	+
GWHAAZE00000001	CDS	111935903	111936019	+
GWHAAZE00000001	CDS	111936472	111936783	+
GWHAAZE00000001	CDS	111937058	111937831	+

Transcript Sequence
>GWHTAAZE004144 ATGAAATATAGTATCATATCCACATTTTTGTTGTTATTGGTGGCATATGTACGAGCGCAGGACGACACTTTTGATATAGCAAAATATGGAGCCCAACCAAATGCAGATGTTACTCAGGCTTTGACAGACGCATGGAAAGCGGCATGCGAAGCTACAGCTCCAAGCACGCTTATGATCCCACCAGAGACATATATGTTAGGTCAAATAACCCTATCAGGTCCTTGCAAGGCTGCAGTGACCATTCAACTGCAGGGTACCCTAAAAGCCCCGGAAGACCCAGCTACATTCAAGGCAGATCAAGAATGGGTTACTTTGCAAAGCATTGACCTTCTCACTCTAACTGGTGGCGGAACCTTAAATGGCCAAGGTGCCACTGCTTGGGGACAAAATGATTGCCACAAAACTGGACAATGTAGTAAACTTCCCATTAATCTGAGCCTCAATTCCATTACTAACTCGCTCATCCAAGGAGTAACTTCCGCAGACAGCAAATTATTTCACGTCAATGTCTTGGGATGTAAGAACTTAACATTCGTAAACTTTACCATAAGTGCACCCGAAACGAGCAAAAACACTGATGGAATCCACATTGGCCGTTCAAACGGTATCAATATCACCGACTCAAACATAAAAACCGGAGACGATTGCGTGTCCATCGGCGATGGTAGCCAGCAAATTAGTGTCACTAAAGTTACCTGTGGACCTGGCCATGGCATCAGTGTGGGAAGTCTTGGGAGGTACCCTAATGAACAAGACGTGGTTGGAATCACCGTTAAAAATTGCACATTTATCGGTACAATGAATGGCGTTAGAGTGAAAACTTGGCCAGCTTCCCCTCCAGGGATCGCGTCTGACTTGCACTTCGAGGATCTTATCATGGACAATGTTGGTAATCCTGTTCTTATTGATCAAGAGTACTGCCCGTATAATCAGTGCACGCAAAATGTGCCTTCGAAAGTTAAGATTAGTAAAGTTAGTTTTAAGAACATTAGGGGTACTTCGTCTACGCAACTTGCTGTAAAGCTTGTTTGCAGTAAAGGGTTCCCCTGCGAAGGCGTGGAAGTTGGAGATATTGACCTGACATATAATGGAAAAGAAGGACCTGCCATTAGCCAGTGTGCTAATCTTTCGCCAACATTTTCGGGGAAATTGAACCCACCAGAATGCACTGCTCAAGCACCCGGCCAAGCACCTGCTGCTTAA

Network for GWHGAAZE004138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	49	377	1.20E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.394
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.323
	SRR3591708	Shoot apex	0.495
	SRR3591709	Stem	2.347
	SRR3591710	White floral bud	332.781
	SRR3591711	White flower	6.635
	SRR3591712	Green floral bud	479.752
	SRR3591713	Yellow flower	2.507
SRP173429	SRR8316895	Juvenile bud stage	89.669
	SRR8316896	Juvenile bud stage	250.706
	SRR8316897	Juvenile bud stage	127.513
	SRR8316894	Third green stage	88.618
	SRR8316900	Third green stage	380.276
	SRR8316901	Third green stage	414.432
	SRR8316898	Complete white stage	0.496
	SRR8316899	Complete white stage	3.401
	SRR8316903	Complete white stage	0.536
	SRR8316902	Silver flowering stage	3.753
	SRR8316904	Silver flowering stage	7.793
	SRR8316905	Silver flowering stage	2.340
	SRR8316906	Gold flowering stage	1.972
	SRR8316907	Gold flowering stage	0.186
	SRR8316908	Gold flowering stage	0.590
SRP132670	SRR6706286	Control	264.987
	SRR6706287	Light intensity 50%	254.210
	SRR6706288	Light intensity 20%	223.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	600.787
	CNS0095593	Slightly white alabastrum(diploid) 2	510.890
	CNS0095594	Slightly white alabastrum(diploid) 3	888.757
	CNS0095595	Whole white alabastrum(diploid) 2	1028.630
	CNS0095596	Whole white alabastrum(diploid) 3	1183.241
	CNS0095597	Whole white alabastrum(diploid) 4	1319.246
	CNS0095598	Silvery flower (diploied) 1	15.636
	CNS0095599	Silvery flower (diploied) 2	59.371
	CNS0095600	Silvery flower (diploied) 3	15.772
	CNS0095601	Golden flower (diploid) 1	19.666
	CNS0095602	Golden flower (diploid) 2	12.423
	CNS0095603	Golden flower (diploid) 3	13.746
	CNS0095604	Slightly white alabastrum(tetraploid) 1	683.309
	CNS0095605	Slightly white alabastrum(tetraploid) 2	812.695
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	1208.692
	CNS0095608	Whole white alabastrum(tetraploid) 2	1313.563
	CNS0095609	Whole white alabastrum(tetraploid) 3	605.248
	CNS0095610	Silvery flower (tetraploid) 1	3.534
	CNS0095611	Silvery flower (tetraploid) 2	25.097
	CNS0095612	Silvery flower (tetraploid) 3	60.917
	CNS0095613	Golden flower (tetraploid) 1	11.096
	CNS0095614	Golden flower (tetraploid) 2	2.051
	CNS0095615	Golden flower (tetraploid) 3	20.017
CRA001975	CRR073297	Stem 1	132.010
	CRR073298	Stem 2	144.566
	CRR073299	Stem 3	76.901
	CRR073300	Leaf 1	410.173
	CRR073301	Leaf 2	294.588
	CRR073302	Leaf 3	171.477
	CRR073303	Juvenile bud 1	269.237
	CRR073304	Juvenile bud 2	212.183
	CRR073305	Juvenile bud 3	28.844
	CRR073306	Third green 1	205.845
	CRR073307	Third green 2	303.214
	CRR073308	Third green 3	221.687
	CRR073309	Second white 1	17.506
	CRR073310	Second white 2	37.617
	CRR073311	Second white 3	37.450
	CRR073312	Silver flowering 1	187.326
	CRR073313	Silver flowering 2	146.103
	CRR073314	Silver flowering 3	108.381
	CRR073315	Gold flowering 1	207.208
	CRR073316	Gold flowering 2	43.530
	CRR073317	Gold flowering 3	125.736
	CRR073318	Tawny withering 1	164.792
	CRR073319	Tawny withering 2	141.895
	CRR073320	Tawny withering 3	159.746