Gene detail

Detail information of GWHGAAZE004149

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007029374.1	1.15836E-61	Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
trEMBL	tr\|A0A061EYJ5\|A0A061EYJ5_THECC	4E-62	Cysteine/Histidine-rich C1 domain family protein, putative {ECO:0000313\|EMBL:EOY09876.1}
TAIR10	AT5G59940.1	4E-33	Cysteine/Histidine-rich C1 domain family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112233014	112235001	-
GWHAAZE00000001	mRNA	112233014	112235001	-
GWHAAZE00000001	exon	112233014	112233040	-
GWHAAZE00000001	exon	112233145	112234100	-
GWHAAZE00000001	exon	112234259	112234323	-
GWHAAZE00000001	exon	112234487	112235001	-
GWHAAZE00000001	CDS	112234487	112235001	-
GWHAAZE00000001	CDS	112234259	112234323	-
GWHAAZE00000001	CDS	112233145	112234100	-
GWHAAZE00000001	CDS	112233014	112233040	-

Transcript Sequence
>GWHTAAZE004155 ATGCAGATTGATCATTTCATCCATGAACATCCTCTAATCCTCGAAGAAGAAGAGCATAAGCATGATATTGGCAATGATGATGATGATGGTGATATTCAAACATTTCGCCGCTGCAATGGTTGTTTGGATCCAATATCATCCTCCTTCTTAAGTGGTGCTTATTACAGTTGTGTGAACAATAATTGTGAGTTTTTCCTGCATAAATTATGTGCGGAACTTCCTCCAGAGATTAACCACCCCTTCCACCCGGAGCACAAGCTTACTCTCTTCGCGGAAAGGTCTAGCAGAAGTTTTTATAGGAAAAAATTCGTCTACCATTGCTATGAATGTGGCTTTGACCTCGACATAATTTCTGCTACTCTAGCAGAGCGCAAGATTGATCACAAGAGTCACATACATCCCTTAATTCGACTTCCCATCGCCAGAATTGACCAATTGCCATGCCTGCGGCACAGAACACAAAGGCATCTTCTACCAGTGTCCCACTTGCTTCTTATTCACGATCCACGAGGATTATTCTGTGCTCACGTGAATTGTGCAACATCAAAGATTGAACCTTTTATGTCAATCTTTTTGCCCCGACGAACATCAAAGGTTACATTACAAGAAGTTGAGGATTCCGGTAGTAGTGATGTGATTCATTTTCCGGTGGTTGATCAATCAGTCACACTAATAAGCTATATTCTTAAGGGAACCAATATTGTAACAGAGGATGAGACAGCAAATCAGATACTCAATCATTATAGCCATGACCATTCATTGATTCTTGAGGTGCAAGATAGTGACAGTGAGCCAAGCTCCAAAAGAAAATTATGCCTCATGAATGACACAAGGGTTGACGAAACTATATGCGACGCATGTGTGAGACCTATTTTCGCAACTCCATTTTATAGGTGCGCTGATCAATGCAATTTCTTTCTCCACAAATGTTGTGCGGAGTTACCCGCCAAGATTGATCAACACCCATCTCATCCAGAACACTCGCTAGTACTCCTCACCAAGTCCCCTACTTTTTTTGATTTGTTTTGGTGCGGAGGTTGTGAATTGTATTGCAATGGGTTTTGTTACGCGTGCAACAGCTGCAATTTCTATCTAGATGTACAATGTGGTTCCCTGCCCAACACTATAAAACATGAAGGTCATCACCCTAATCATGTACTCTCTTTGAGGAAAAAAATTTCTAATCGATGTAATGCATGTTTAGGTATGTCGTCAATATTGGCATATGGTTGTAATAGTTGTGATTTTGAACTAGACTCATGTTGTGCTCTATTGTCACATAAAGTTAGGCACAGGTATGATGAGCATCCCTTCATCTTAACCTACAACCCGGTTAAATACCACTCTGATGAGTATTATTGCGACCTCTGCGAGGAAGCGCTAAATCCGAAGACGTGGTTTTATCACTGCGTTGATTGTGACAGGTCAATTCATATCGGATGCCTCCGTCCATTTTATAGTTGGGCAAATATAAAGTACGGAGCTGGGAGAAGTCTTGAGATTGAGAGTCACCAACACCCTCTTGCACTTGCCCCAGTCTTGCGGAGAAACTTTTGGCTTTAG

Network for GWHGAAZE004149

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0002

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03107.17	C1_2	7	71	1.60E-06
PF03107.17	C1_2	249	312	1.20E-06
PF03107.17	C1_2	322	369	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.914
	SRR3591706	second leaf	3.579
	SRR3591707	mature leaf	1.709
	SRR3591708	Shoot apex	8.826
	SRR3591709	Stem	13.997
	SRR3591710	White floral bud	1.347
	SRR3591711	White flower	2.532
	SRR3591712	Green floral bud	1.517
	SRR3591713	Yellow flower	0.217
SRP173429	SRR8316895	Juvenile bud stage	5.050
	SRR8316896	Juvenile bud stage	3.254
	SRR8316897	Juvenile bud stage	4.280
	SRR8316894	Third green stage	3.255
	SRR8316900	Third green stage	5.130
	SRR8316901	Third green stage	2.963
	SRR8316898	Complete white stage	0.934
	SRR8316899	Complete white stage	12.505
	SRR8316903	Complete white stage	1.918
	SRR8316902	Silver flowering stage	1.266
	SRR8316904	Silver flowering stage	0.268
	SRR8316905	Silver flowering stage	0.040
	SRR8316906	Gold flowering stage	0.182
	SRR8316907	Gold flowering stage	0.069
	SRR8316908	Gold flowering stage	0.090
SRP132670	SRR6706286	Control	8.042
	SRR6706287	Light intensity 50%	7.428
	SRR6706288	Light intensity 20%	7.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.387
	CNS0095593	Slightly white alabastrum(diploid) 2	6.758
	CNS0095594	Slightly white alabastrum(diploid) 3	4.016
	CNS0095595	Whole white alabastrum(diploid) 2	3.869
	CNS0095596	Whole white alabastrum(diploid) 3	3.341
	CNS0095597	Whole white alabastrum(diploid) 4	5.158
	CNS0095598	Silvery flower (diploied) 1	5.106
	CNS0095599	Silvery flower (diploied) 2	6.478
	CNS0095600	Silvery flower (diploied) 3	2.435
	CNS0095601	Golden flower (diploid) 1	5.919
	CNS0095602	Golden flower (diploid) 2	4.821
	CNS0095603	Golden flower (diploid) 3	3.335
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.888
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.741
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.880
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.460
	CNS0095610	Silvery flower (tetraploid) 1	0.586
	CNS0095611	Silvery flower (tetraploid) 2	1.283
	CNS0095612	Silvery flower (tetraploid) 3	1.000
	CNS0095613	Golden flower (tetraploid) 1	0.157
	CNS0095614	Golden flower (tetraploid) 2	0.513
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	7.328
	CRR073298	Stem 2	4.994
	CRR073299	Stem 3	2.960
	CRR073300	Leaf 1	4.733
	CRR073301	Leaf 2	5.145
	CRR073302	Leaf 3	4.097
	CRR073303	Juvenile bud 1	3.043
	CRR073304	Juvenile bud 2	0.652
	CRR073305	Juvenile bud 3	6.623
	CRR073306	Third green 1	0.669
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.393
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.595
	CRR073316	Gold flowering 2	3.962
	CRR073317	Gold flowering 3	1.843
	CRR073318	Tawny withering 1	9.528
	CRR073319	Tawny withering 2	3.736
	CRR073320	Tawny withering 3	9.996