Gene detail

Detail information of GWHGAAZE004151

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU40671.1	1.6197E-124	hypothetical protein MIMGU_mgv1a013423mg [Erythranthe guttata]
Swissprot	tr\|Q9FTZ2\|EBP_ORYSJ	9E-89	Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
trEMBL	tr\|A0A022RKF2\|A0A022RKF2_ERYGU	6E-125	Uncharacterized protein {ECO:0000313\|EMBL:EYU40671.1}
TAIR10	AT1G20050.1	9E-65	C-8,7 sterol isomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112255607	112259089	-
GWHAAZE00000001	mRNA	112255607	112259089	-
GWHAAZE00000001	exon	112258713	112259089	-
GWHAAZE00000001	exon	112256666	112256812	-
GWHAAZE00000001	exon	112256430	112256538	-
GWHAAZE00000001	exon	112255607	112255871	-
GWHAAZE00000001	five_prime_UTR	112258918	112259089	-
GWHAAZE00000001	CDS	112258713	112258917	-
GWHAAZE00000001	CDS	112256666	112256812	-
GWHAAZE00000001	CDS	112256430	112256538	-
GWHAAZE00000001	CDS	112255607	112255871	-

Transcript Sequence
>GWHTAAZE004157 ATTATGACAAATAATAATAATTAAGATAATATGCCGTCAGAAAAGACTCAAGTAGAATACGCAATAGTTCCAATTAAGAGCTCCTCTCAGTCTTTCTCACTCTTCTGCTAGACTCGCGGATCGGAGAAGAGAGAGAGGAGCCCTAACTTTGACTTTCTCTTCTCTAGTAGTAGCGAGAGAGAGAGAGAGAATTTCAAAGTCCAAACATTCAGAGGGGGAATTAGAAAAAATGGAGTCTCATCATCATTATCATCCTTATGTTCCTAAAGATCTGAATCTGCCTGATTATGTCCCAGTTTTACTTTCCCAGTCAACTATTCTCAGTGTCTATGGCATCTCTTCTCTTCTCGTCGTTTCCTTCATTTGGATCTTATCTGGGCGATTTCCTAAAATATCAAAGACTGAGAGATCGCTCATGTGCTGGTGGGTCTTCACGGGTCTGACCCACATGGTCCTTGAGGGTTATTTTGTTTTCTCTCCAGAATTTTACAAGGAGAAGACCCCCTGTTACCTTGCAGAAGTTTGGAAAGAATACAGCAAAGGTGATTCAAGATATGCGGCTAGGGATGCTGGAGTTGTTGCTGTTGAAGGAATTACTGCTGTTTTAGAGGGTCCTGCTTGCCTTATAGCCGCGTATGCTATAGCCACAAGAAAGTCATATAGTGACATACTTCAAGTGGCCATATCTCTTGGGCAGCTCTATGGAACTGCTGTATATTTCGTTACTTCTTTACTGGAAGGGGACAACTTTGCTACTAGCCAATACTACTATTATGCATATTATGTCTTTGCAAATTCTTTCTGGGTTTTCGTTCCTACGCTTATAGTCGTTCGATGCTGGAAGAAAATATGCGCAGCAATGCCAGTCTCACAACAGAAAAAGAATAAAACTCGGTAA

Network for GWHGAAZE004151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05241.13	EBP	114	222	1.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01824	EBP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0016125	biological_process	sterol metabolic process
GO:0016021	cellular_component	integral component of membrane
GO:0047750	molecular_function	cholestenol delta-isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.390
	SRR3591706	second leaf	11.402
	SRR3591707	mature leaf	6.442
	SRR3591708	Shoot apex	27.812
	SRR3591709	Stem	23.402
	SRR3591710	White floral bud	17.430
	SRR3591711	White flower	15.491
	SRR3591712	Green floral bud	25.037
	SRR3591713	Yellow flower	12.942
SRP173429	SRR8316895	Juvenile bud stage	20.898
	SRR8316896	Juvenile bud stage	33.293
	SRR8316897	Juvenile bud stage	16.708
	SRR8316894	Third green stage	13.093
	SRR8316900	Third green stage	33.605
	SRR8316901	Third green stage	31.753
	SRR8316898	Complete white stage	15.827
	SRR8316899	Complete white stage	41.868
	SRR8316903	Complete white stage	20.830
	SRR8316902	Silver flowering stage	21.674
	SRR8316904	Silver flowering stage	23.321
	SRR8316905	Silver flowering stage	10.738
	SRR8316906	Gold flowering stage	39.019
	SRR8316907	Gold flowering stage	29.855
	SRR8316908	Gold flowering stage	42.893
SRP132670	SRR6706286	Control	18.919
	SRR6706287	Light intensity 50%	21.535
	SRR6706288	Light intensity 20%	23.782
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.973
	CNS0095593	Slightly white alabastrum(diploid) 2	34.598
	CNS0095594	Slightly white alabastrum(diploid) 3	41.962
	CNS0095595	Whole white alabastrum(diploid) 2	32.336
	CNS0095596	Whole white alabastrum(diploid) 3	31.594
	CNS0095597	Whole white alabastrum(diploid) 4	29.870
	CNS0095598	Silvery flower (diploied) 1	26.941
	CNS0095599	Silvery flower (diploied) 2	22.585
	CNS0095600	Silvery flower (diploied) 3	27.701
	CNS0095601	Golden flower (diploid) 1	24.669
	CNS0095602	Golden flower (diploid) 2	29.949
	CNS0095603	Golden flower (diploid) 3	25.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.918
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.038
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.079
	CNS0095610	Silvery flower (tetraploid) 1	54.681
	CNS0095611	Silvery flower (tetraploid) 2	29.975
	CNS0095612	Silvery flower (tetraploid) 3	39.755
	CNS0095613	Golden flower (tetraploid) 1	43.882
	CNS0095614	Golden flower (tetraploid) 2	46.198
	CNS0095615	Golden flower (tetraploid) 3	37.340
CRA001975	CRR073297	Stem 1	14.642
	CRR073298	Stem 2	15.848
	CRR073299	Stem 3	12.443
	CRR073300	Leaf 1	16.125
	CRR073301	Leaf 2	12.351
	CRR073302	Leaf 3	14.942
	CRR073303	Juvenile bud 1	14.672
	CRR073304	Juvenile bud 2	13.813
	CRR073305	Juvenile bud 3	16.015
	CRR073306	Third green 1	4.307
	CRR073307	Third green 2	6.789
	CRR073308	Third green 3	4.601
	CRR073309	Second white 1	5.667
	CRR073310	Second white 2	4.892
	CRR073311	Second white 3	2.702
	CRR073312	Silver flowering 1	4.466
	CRR073313	Silver flowering 2	3.231
	CRR073314	Silver flowering 3	1.213
	CRR073315	Gold flowering 1	6.624
	CRR073316	Gold flowering 2	11.049
	CRR073317	Gold flowering 3	6.395
	CRR073318	Tawny withering 1	13.402
	CRR073319	Tawny withering 2	17.670
	CRR073320	Tawny withering 3	15.763