Gene detail

Detail information of GWHGAAZE004153

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240755.1	0	PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Prunus mume]
COG	YP_001435364.1	2E-17	glycosyl transferase family protein
trEMBL	tr\|M5XC16\|M5XC16_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16635.1}
TAIR10	AT2G41490.1	3E-135	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112272690	112277629	+
GWHAAZE00000001	mRNA	112272690	112277629	+
GWHAAZE00000001	exon	112272690	112273069	+
GWHAAZE00000001	exon	112274175	112274262	+
GWHAAZE00000001	exon	112274765	112274856	+
GWHAAZE00000001	exon	112274963	112275081	+
GWHAAZE00000001	exon	112275440	112275555	+
GWHAAZE00000001	exon	112275699	112275826	+
GWHAAZE00000001	exon	112275954	112276040	+
GWHAAZE00000001	exon	112277210	112277330	+
GWHAAZE00000001	exon	112277570	112277629	+
GWHAAZE00000001	CDS	112272690	112273069	+
GWHAAZE00000001	CDS	112274175	112274262	+
GWHAAZE00000001	CDS	112274765	112274856	+
GWHAAZE00000001	CDS	112274963	112275081	+
GWHAAZE00000001	CDS	112275440	112275555	+
GWHAAZE00000001	CDS	112275699	112275826	+
GWHAAZE00000001	CDS	112275954	112276040	+
GWHAAZE00000001	CDS	112277210	112277330	+
GWHAAZE00000001	CDS	112277570	112277629	+

Transcript Sequence
>GWHTAAZE004159 ATGACAGCTCGCAAGAGAGCTCAATCAGCCACCACCGGCGCCGCCGTGAGACCACCGTCAACTGACACTCAACGCCACAAGTCCGAACCAGCCACTTCTTCAACCTCCTCAACGGACCCTCCGATCATCGCTCCGTCAAAAGCAGGCCAGATACTCAAATTCTCTCTCATATTCTTCGTCCCTTACTTTTACCTAATTTGCTATCACTACAGAATCGAAAACGAGCTCAAAAAATCGATCCTCATTAATGCATCCCTTAGCTTCGTGGGGTTCTTCCTAACCTTAACTATGATCCCCGTGGCTTCCAAATACGTTCTGAGGCGTAATTTGTTTGGATTCGATATCAATAAGAAGGGTACACCTCAAGGTTCCATCAAAGTGCCTGAGTCATTGGGTATTGTTGTTGGCATTGTTTTCCTGGTCATAACAATCTTATTTCAATATTTTAACTTCACATCTGATTCAAATTGGCTTGTTGAGTATAATGCTGCATTAGCATCCATCTGCTTCATGACTTTGCTTGGATTTGTAGATGATGTCCTTGATATACCTTGGAGAGTGAAATTATTATTGCCATCTATTGCTGCTCTTCCCTTGTTGATGGCCTACGCTGGGCACACAACTATTATTATACCAAAGCCTCTTGTTCCATATGTTGGACTAGAGATTTTGGATCTGGGATGGATGTATAAACTATATATGGGGCTCTTAGCTGTATTTTGCACAAATTCAATCAATATTCATGCTGGTTTGAATGGCCTTGAGGTCGGCCAGACAGTCGTTATTGGATTTGCTATTCTGATACACAATGTAATGCAAATTGGAGCATCTAGCGATCCGGAGTATAAGCAGGCCCATGCATTTTCTATTTATCTCGTTCAACCGTTACTTGCAACTTCTTTGGCTTTACTTTCTTATAACTGGTATCCTTCTTCAGTATTTGTGGGAGACACTTTCACATACTTTGCTGGAATGACGATGGCTGTGGTTGGTATTTTGGGCCACTTTAGATTTGACCCTCAGACGGGTCTACTGACTGGGACAAATGATGGAACACTCGTCAATTTATTCTTAAGAAGATTTGGCAGAAAGTCTGAAAAGTCACTTTGCATCCTACTTCTAGTTTTCCAGGCTCTGGGGTGCTGCTTCTGTTTCATGCTGAGGTGGGTCCTCACCGGATGGTACAAATGA

Network for GWHGAAZE004153

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00953.22	Glycos_transf_4	164	334	1.50E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01001	ALG7	Metabolic pathways	map01100
K01001	ALG7	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006487	biological_process	protein N-linked glycosylation
GO:0006488	biological_process	dolichol-linked oligosaccharide biosynthetic process
GO:0016021	cellular_component	integral component of membrane
GO:0008963	molecular_function	phospho-N-acetylmuramoyl-pentapeptide-transferase activity
GO:0003975	molecular_function	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.291
	SRR3591706	second leaf	41.284
	SRR3591707	mature leaf	27.951
	SRR3591708	Shoot apex	41.413
	SRR3591709	Stem	26.434
	SRR3591710	White floral bud	39.082
	SRR3591711	White flower	30.916
	SRR3591712	Green floral bud	34.936
	SRR3591713	Yellow flower	62.415
SRP173429	SRR8316895	Juvenile bud stage	40.300
	SRR8316896	Juvenile bud stage	37.620
	SRR8316897	Juvenile bud stage	21.412
	SRR8316894	Third green stage	21.393
	SRR8316900	Third green stage	51.876
	SRR8316901	Third green stage	51.038
	SRR8316898	Complete white stage	24.572
	SRR8316899	Complete white stage	56.613
	SRR8316903	Complete white stage	55.827
	SRR8316902	Silver flowering stage	38.131
	SRR8316904	Silver flowering stage	62.566
	SRR8316905	Silver flowering stage	28.261
	SRR8316906	Gold flowering stage	83.411
	SRR8316907	Gold flowering stage	80.754
	SRR8316908	Gold flowering stage	68.394
SRP132670	SRR6706286	Control	31.995
	SRR6706287	Light intensity 50%	35.020
	SRR6706288	Light intensity 20%	40.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.691
	CNS0095593	Slightly white alabastrum(diploid) 2	33.677
	CNS0095594	Slightly white alabastrum(diploid) 3	37.195
	CNS0095595	Whole white alabastrum(diploid) 2	38.262
	CNS0095596	Whole white alabastrum(diploid) 3	34.238
	CNS0095597	Whole white alabastrum(diploid) 4	32.143
	CNS0095598	Silvery flower (diploied) 1	73.456
	CNS0095599	Silvery flower (diploied) 2	37.115
	CNS0095600	Silvery flower (diploied) 3	47.123
	CNS0095601	Golden flower (diploid) 1	25.572
	CNS0095602	Golden flower (diploid) 2	75.589
	CNS0095603	Golden flower (diploid) 3	72.876
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.577
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.337
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.017
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.735
	CNS0095610	Silvery flower (tetraploid) 1	31.131
	CNS0095611	Silvery flower (tetraploid) 2	19.181
	CNS0095612	Silvery flower (tetraploid) 3	10.652
	CNS0095613	Golden flower (tetraploid) 1	20.744
	CNS0095614	Golden flower (tetraploid) 2	31.551
	CNS0095615	Golden flower (tetraploid) 3	36.280
CRA001975	CRR073297	Stem 1	18.418
	CRR073298	Stem 2	15.913
	CRR073299	Stem 3	11.412
	CRR073300	Leaf 1	15.847
	CRR073301	Leaf 2	14.194
	CRR073302	Leaf 3	10.163
	CRR073303	Juvenile bud 1	8.922
	CRR073304	Juvenile bud 2	9.607
	CRR073305	Juvenile bud 3	11.243
	CRR073306	Third green 1	12.941
	CRR073307	Third green 2	10.314
	CRR073308	Third green 3	9.614
	CRR073309	Second white 1	16.245
	CRR073310	Second white 2	13.070
	CRR073311	Second white 3	11.444
	CRR073312	Silver flowering 1	19.192
	CRR073313	Silver flowering 2	20.089
	CRR073314	Silver flowering 3	21.764
	CRR073315	Gold flowering 1	2.720
	CRR073316	Gold flowering 2	5.247
	CRR073317	Gold flowering 3	5.557
	CRR073318	Tawny withering 1	11.047
	CRR073319	Tawny withering 2	9.386
	CRR073320	Tawny withering 3	8.360