Detail information of GWHGAAZE004163


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007145575.10hypothetical protein PHAVU_007G250100g [Phaseolus vulgaris]
trEMBLtr|V7BI41|V7BI41_PHAVU0Eukaryotic translation initiation factor 3 subunit E {ECO:0000256|HAMAP-Rule:MF_03004}
TAIR10AT3G57290.10eukaryotic translation initiation factor 3E

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene112475632112481284-
GWHAAZE00000001mRNA112475632112481284-
GWHAAZE00000001exon112481077112481284-
GWHAAZE00000001exon112480325112480479-
GWHAAZE00000001exon112478285112478512-
GWHAAZE00000001exon112478071112478192-
GWHAAZE00000001exon112477329112477548-
GWHAAZE00000001exon112477040112477182-
GWHAAZE00000001exon112476483112476620-
GWHAAZE00000001exon112475632112475734-
GWHAAZE00000001CDS112481077112481284-
GWHAAZE00000001CDS112480325112480479-
GWHAAZE00000001CDS112478285112478512-
GWHAAZE00000001CDS112478071112478192-
GWHAAZE00000001CDS112477329112477548-
GWHAAZE00000001CDS112477040112477182-
GWHAAZE00000001CDS112476483112476620-
GWHAAZE00000001CDS112475632112475734-
Transcript Sequence

Network for GWHGAAZE004163

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09440.11eIF3_N51379.50E-49
PF01399.28PCI2853995.80E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03250EIF3E, INT6 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0005515molecular_functionprotein binding
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf80.894
SRR3591706second leaf48.210
SRR3591707mature leaf37.359
SRR3591708Shoot apex87.618
SRR3591709Stem50.286
SRR3591710White floral bud76.203
SRR3591711White flower111.259
SRR3591712Green floral bud116.398
SRR3591713Yellow flower86.758
SRP173429 SRR8316895Juvenile bud stage 69.509
SRR8316896Juvenile bud stage 103.752
SRR8316897Juvenile bud stage 47.831
SRR8316894Third green stage 38.225
SRR8316900Third green stage 113.158
SRR8316901Third green stage 98.083
SRR8316898Complete white stage 29.914
SRR8316899Complete white stage 104.775
SRR8316903Complete white stage 47.142
SRR8316902Silver flowering stage43.396
SRR8316904Silver flowering stage52.185
SRR8316905Silver flowering stage23.663
SRR8316906Gold flowering stage 76.823
SRR8316907Gold flowering stage 82.168
SRR8316908Gold flowering stage 89.586
SRP132670SRR6706286Control39.731
SRR6706287Light intensity 50%44.882
SRR6706288Light intensity 20%50.230
CNP0000432CNS0095592Slightly white alabastrum(diploid) 156.838
CNS0095593Slightly white alabastrum(diploid) 259.552
CNS0095594Slightly white alabastrum(diploid) 355.671
CNS0095595Whole white alabastrum(diploid) 248.462
CNS0095596Whole white alabastrum(diploid) 354.364
CNS0095597Whole white alabastrum(diploid) 441.761
CNS0095598Silvery flower (diploied) 144.834
CNS0095599Silvery flower (diploied) 242.644
CNS0095600Silvery flower (diploied) 370.316
CNS0095601Golden flower (diploid) 132.690
CNS0095602Golden flower (diploid) 259.759
CNS0095603Golden flower (diploid) 355.314
CNS0095604Slightly white alabastrum(tetraploid) 158.044
CNS0095605Slightly white alabastrum(tetraploid) 244.228
CNS0095606Slightly white alabastrum(tetraploid) 386.964
CNS0095607Whole white alabastrum(tetraploid) 128.917
CNS0095608Whole white alabastrum(tetraploid) 228.740
CNS0095609Whole white alabastrum(tetraploid) 372.395
CNS0095610Silvery flower (tetraploid) 161.278
CNS0095611Silvery flower (tetraploid) 256.744
CNS0095612Silvery flower (tetraploid) 347.474
CNS0095613Golden flower (tetraploid) 131.548
CNS0095614Golden flower (tetraploid) 250.572
CNS0095615Golden flower (tetraploid) 347.352
CRA001975CRR073297Stem 154.771
CRR073298Stem 251.162
CRR073299Stem 355.396
CRR073300Leaf 143.743
CRR073301Leaf 246.633
CRR073302Leaf 351.303
CRR073303Juvenile bud 150.853
CRR073304Juvenile bud 240.576
CRR073305Juvenile bud 352.338
CRR073306Third green 116.927
CRR073307Third green 218.176
CRR073308Third green 320.837
CRR073309Second white 143.869
CRR073310Second white 233.212
CRR073311Second white 331.042
CRR073312Silver flowering 148.938
CRR073313Silver flowering 253.672
CRR073314Silver flowering 346.939
CRR073315Gold flowering 131.190
CRR073316Gold flowering 239.865
CRR073317Gold flowering 331.012
CRR073318Tawny withering 141.507
CRR073319Tawny withering 236.328
CRR073320Tawny withering 346.143