Gene detail

Detail information of GWHGAAZE004164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008364026.1	6.8811E-125	PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
COG	YP_007058629.1	9E-48	carbonic anhydrase
Swissprot	tr\|F4JIK2\|ATCA4_ARATH	1E-100	Alpha carbonic anhydrase 4 (Precursor)
trEMBL	tr\|A0A059A215\|A0A059A215_EUCGR	2E-123	Uncharacterized protein {ECO:0000313\|EMBL:KCW47833.1}
TAIR10	AT4G20990.1	3E-81	alpha carbonic anhydrase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112490952	112493942	+
GWHAAZE00000001	mRNA	112490952	112493942	+
GWHAAZE00000001	exon	112490952	112491188	+
GWHAAZE00000001	exon	112491622	112491728	+
GWHAAZE00000001	exon	112492176	112492278	+
GWHAAZE00000001	exon	112492746	112492904	+
GWHAAZE00000001	exon	112493171	112493224	+
GWHAAZE00000001	exon	112493865	112493942	+
GWHAAZE00000001	CDS	112490952	112491188	+
GWHAAZE00000001	CDS	112491622	112491728	+
GWHAAZE00000001	CDS	112492176	112492278	+
GWHAAZE00000001	CDS	112492746	112492904	+
GWHAAZE00000001	CDS	112493171	112493224	+
GWHAAZE00000001	CDS	112493865	112493942	+

Transcript Sequence
>GWHTAAZE004170 ATGTGTGTAAAAATTGCAGACAATGAAACACCATTCACATATGCTGAAGGAGCTGAAAAAGGACCAAAAGAGTGGGGGCATGTGAACTCAACATGGAAAGTTTGTGATAGTGGAAAATTGCAGTCCCCAATAGATCTTGCAAGTAAAAGGGTCCAAGTTTTCCCTGGCCTTGGCAAACTCAAGAAGAGTTACAAACCTGCCCTTGCCCAAATTATCAATAGGGGTCATGATATTCAAGTAAAATGGAACGGGGATGCAGGGAAGATTAACATAAATGGCACAGTCTACAAATTACAACAATGCCACTGGCATTCTCCTTCTGAGCATACTATCAATGGTAAAAGGTTCAATATGGAGATGCATGTTGTTCATAGCAACTCTAAGGGAGGGATAGCTGTCATCGGAATTTTATTCAAATTCGGACGCGCTGACCCTTTCCTTTCAAAGCTAATAGGGCACTTGAAAACCGTGGGTGAAAAAGGAGAAGATTTGGGGGTTGTAAACCCCAGTGAAATCAAATTTGGGAGCAGAAAATACTACAGATATATTGGCTCTCTTACTGTTCCTCCATGCACTGAAGGTGTTACTTGGACTGTTCTCAAGAAGATAAGGACAGTTTCAAGGGAGCAAGTGAGAGCATTAAGGGATGCTGTTCATGATGGATTTGAAGATAATGCAAGGCCTGTCCAAGATGTTGATGGTAGACAAGTTAATTTATATAATGCGAGGGACAATTGA

Network for GWHGAAZE004164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00194.22	Carb_anhydrase	13	238	2.60E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01674	cah	Metabolic pathways	map01100
K01674	cah	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.740
	SRR3591706	second leaf	0.122
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	1.076
	SRR3591709	Stem	5.810
	SRR3591710	White floral bud	757.525
	SRR3591711	White flower	41.170
	SRR3591712	Green floral bud	757.889
	SRR3591713	Yellow flower	29.998
SRP173429	SRR8316895	Juvenile bud stage	98.868
	SRR8316896	Juvenile bud stage	304.097
	SRR8316897	Juvenile bud stage	138.180
	SRR8316894	Third green stage	113.882
	SRR8316900	Third green stage	471.493
	SRR8316901	Third green stage	486.272
	SRR8316898	Complete white stage	0.058
	SRR8316899	Complete white stage	2.497
	SRR8316903	Complete white stage	0.705
	SRR8316902	Silver flowering stage	8.156
	SRR8316904	Silver flowering stage	18.372
	SRR8316905	Silver flowering stage	4.661
	SRR8316906	Gold flowering stage	1.137
	SRR8316907	Gold flowering stage	0.925
	SRR8316908	Gold flowering stage	0.547
SRP132670	SRR6706286	Control	58.835
	SRR6706287	Light intensity 50%	74.668
	SRR6706288	Light intensity 20%	62.136
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	481.846
	CNS0095593	Slightly white alabastrum(diploid) 2	378.428
	CNS0095594	Slightly white alabastrum(diploid) 3	547.075
	CNS0095595	Whole white alabastrum(diploid) 2	933.601
	CNS0095596	Whole white alabastrum(diploid) 3	1088.553
	CNS0095597	Whole white alabastrum(diploid) 4	1357.140
	CNS0095598	Silvery flower (diploied) 1	38.726
	CNS0095599	Silvery flower (diploied) 2	115.755
	CNS0095600	Silvery flower (diploied) 3	19.699
	CNS0095601	Golden flower (diploid) 1	36.877
	CNS0095602	Golden flower (diploid) 2	17.461
	CNS0095603	Golden flower (diploid) 3	17.031
	CNS0095604	Slightly white alabastrum(tetraploid) 1	738.943
	CNS0095605	Slightly white alabastrum(tetraploid) 2	830.585
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	1279.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	1459.950
	CNS0095609	Whole white alabastrum(tetraploid) 3	651.320
	CNS0095610	Silvery flower (tetraploid) 1	11.993
	CNS0095611	Silvery flower (tetraploid) 2	63.873
	CNS0095612	Silvery flower (tetraploid) 3	137.298
	CNS0095613	Golden flower (tetraploid) 1	36.523
	CNS0095614	Golden flower (tetraploid) 2	6.299
	CNS0095615	Golden flower (tetraploid) 3	72.065
CRA001975	CRR073297	Stem 1	50.996
	CRR073298	Stem 2	58.126
	CRR073299	Stem 3	20.524
	CRR073300	Leaf 1	154.469
	CRR073301	Leaf 2	85.760
	CRR073302	Leaf 3	44.105
	CRR073303	Juvenile bud 1	95.757
	CRR073304	Juvenile bud 2	55.200
	CRR073305	Juvenile bud 3	7.746
	CRR073306	Third green 1	35.015
	CRR073307	Third green 2	42.974
	CRR073308	Third green 3	35.631
	CRR073309	Second white 1	2.117
	CRR073310	Second white 2	11.680
	CRR073311	Second white 3	12.362
	CRR073312	Silver flowering 1	54.276
	CRR073313	Silver flowering 2	44.469
	CRR073314	Silver flowering 3	33.004
	CRR073315	Gold flowering 1	70.825
	CRR073316	Gold flowering 2	18.796
	CRR073317	Gold flowering 3	12.820
	CRR073318	Tawny withering 1	49.579
	CRR073319	Tawny withering 2	69.161
	CRR073320	Tawny withering 3	45.639