Gene detail

Detail information of GWHGAAZE004165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010090219.1	8.4281E-120	hypothetical protein L484_016558 [Morus notabilis]
COG	YP_003654533.1	7E-38	carbonate dehydratase
Swissprot	tr\|F4JIK2\|ATCA4_ARATH	7E-88	Alpha carbonic anhydrase 4 (Precursor)
trEMBL	tr\|W9QKC3\|W9QKC3_9ROSA	3E-120	Uncharacterized protein {ECO:0000313\|EMBL:EXB39088.1}
TAIR10	AT4G20990.1	3E-71	alpha carbonic anhydrase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112500847	112503497	+
GWHAAZE00000001	mRNA	112500847	112503497	+
GWHAAZE00000001	exon	112500847	112501041	+
GWHAAZE00000001	exon	112501643	112501749	+
GWHAAZE00000001	exon	112501899	112502001	+
GWHAAZE00000001	exon	112502892	112503050	+
GWHAAZE00000001	exon	112503378	112503497	+
GWHAAZE00000001	CDS	112500847	112501041	+
GWHAAZE00000001	CDS	112501643	112501749	+
GWHAAZE00000001	CDS	112501899	112502001	+
GWHAAZE00000001	CDS	112502892	112503050	+
GWHAAZE00000001	CDS	112503378	112503497	+

Transcript Sequence
>GWHTAAZE004171 ATGGAAGGAACAGGTAAAGGGCCAAAGAAGTGGGGAGAGGTGGACCCGCATTGGAAAGTCTGTGATACTGGCAAGCTTCAGTCTCCCATTGACCTTCTTGACCAAAGGGTTCAAGTATTTCCTAATCTTGGCAAACTCAAAAGGAATTACAAAAAAGCCCCCGCCATTGTTAAAAACAGAGGACATGATATCACAGTGAGATGGGAAGGAGATGCAGGAGGAATTACTATAAATGGTACCTACTACAAATTACTACAATGCCATTGGCATTCTCCTGCTGAGCACACCTTAAATGGAACAAGGTACAATTTGGAGTTGCATGTAATTCATATTAACCCTCACGGAGGCGTTGCTGTTATAGGAATTTTATACAAATACGGTCACCCTGATCCTTTCCTTGCCAAGGTGGAAAGCCATGTGAAAACAGTGGGTAGAGAAGGAATGGAATTGGGGATAGTAAATCCAGGGGATATCAAGTTTGGAAGCAGAAAGTACTACAGATACATGGGTTCACTCACTGTTCCTCCTTGCACTGAAGGTGTTATTTGGACTATTGTCAACAAGGTGAGGACAGTTTCAAGGGACCAACTAAGTGCATTAAGAGAAGCTGTTCATGATGTAAGTGTTTCTAAATCAAGATGGGGTACTTTCAATTTTCAAACACAAAGAGCATGGTCTGCATGA

Network for GWHGAAZE004165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00194.22	Carb_anhydrase	6	205	1.40E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01674	cah	Metabolic pathways	map01100
K01674	cah	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.195
	SRR3591706	second leaf	5.357
	SRR3591707	mature leaf	1.152
	SRR3591708	Shoot apex	11.983
	SRR3591709	Stem	23.448
	SRR3591710	White floral bud	14.147
	SRR3591711	White flower	9.266
	SRR3591712	Green floral bud	24.899
	SRR3591713	Yellow flower	2.082
SRP173429	SRR8316895	Juvenile bud stage	31.336
	SRR8316896	Juvenile bud stage	30.505
	SRR8316897	Juvenile bud stage	9.649
	SRR8316894	Third green stage	4.805
	SRR8316900	Third green stage	13.991
	SRR8316901	Third green stage	8.610
	SRR8316898	Complete white stage	11.902
	SRR8316899	Complete white stage	35.185
	SRR8316903	Complete white stage	7.974
	SRR8316902	Silver flowering stage	3.332
	SRR8316904	Silver flowering stage	5.261
	SRR8316905	Silver flowering stage	2.461
	SRR8316906	Gold flowering stage	4.564
	SRR8316907	Gold flowering stage	3.691
	SRR8316908	Gold flowering stage	3.666
SRP132670	SRR6706286	Control	15.934
	SRR6706287	Light intensity 50%	13.225
	SRR6706288	Light intensity 20%	15.638
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.875
	CNS0095593	Slightly white alabastrum(diploid) 2	14.018
	CNS0095594	Slightly white alabastrum(diploid) 3	24.265
	CNS0095595	Whole white alabastrum(diploid) 2	14.557
	CNS0095596	Whole white alabastrum(diploid) 3	19.881
	CNS0095597	Whole white alabastrum(diploid) 4	12.076
	CNS0095598	Silvery flower (diploied) 1	12.255
	CNS0095599	Silvery flower (diploied) 2	10.834
	CNS0095600	Silvery flower (diploied) 3	8.697
	CNS0095601	Golden flower (diploid) 1	14.245
	CNS0095602	Golden flower (diploid) 2	10.670
	CNS0095603	Golden flower (diploid) 3	10.601
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.285
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.182
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.611
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.903
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.494
	CNS0095610	Silvery flower (tetraploid) 1	3.389
	CNS0095611	Silvery flower (tetraploid) 2	11.770
	CNS0095612	Silvery flower (tetraploid) 3	5.314
	CNS0095613	Golden flower (tetraploid) 1	0.766
	CNS0095614	Golden flower (tetraploid) 2	2.306
	CNS0095615	Golden flower (tetraploid) 3	1.573
CRA001975	CRR073297	Stem 1	27.864
	CRR073298	Stem 2	18.555
	CRR073299	Stem 3	42.315
	CRR073300	Leaf 1	4.812
	CRR073301	Leaf 2	6.797
	CRR073302	Leaf 3	5.303
	CRR073303	Juvenile bud 1	10.831
	CRR073304	Juvenile bud 2	8.249
	CRR073305	Juvenile bud 3	9.682
	CRR073306	Third green 1	1.635
	CRR073307	Third green 2	4.827
	CRR073308	Third green 3	1.564
	CRR073309	Second white 1	0.755
	CRR073310	Second white 2	0.663
	CRR073311	Second white 3	0.083
	CRR073312	Silver flowering 1	0.071
	CRR073313	Silver flowering 2	0.043
	CRR073314	Silver flowering 3	0.567
	CRR073315	Gold flowering 1	0.975
	CRR073316	Gold flowering 2	0.528
	CRR073317	Gold flowering 3	0.315
	CRR073318	Tawny withering 1	7.302
	CRR073319	Tawny withering 2	4.970
	CRR073320	Tawny withering 3	6.348