Detail information of GWHGAAZE004166


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001267893.13.9367E-139uncharacterized protein LOC100248601 [Vitis vinifera]
COGYP_004266541.10.0000002translation initiation factor 2 (bIF-2)
Swissprottr|Q8W4L0|CML49_ARATH2E-121Probable calcium-binding protein CML49
trEMBLtr|E2JF17|E2JF17_VITVI1E-139EF-hand calcium-binding protein {ECO:0000313|EMBL:ADO16596.1}
TAIR10AT3G10300.37E-92Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene112506143112510036-
GWHAAZE00000001mRNA112506143112510036-
GWHAAZE00000001exon112509480112510036-
GWHAAZE00000001exon112507644112507690-
GWHAAZE00000001exon112507356112507531-
GWHAAZE00000001exon112507221112507239-
GWHAAZE00000001exon112506143112506247-
GWHAAZE00000001five_prime_UTR112510006112510036-
GWHAAZE00000001CDS112509480112510005-
GWHAAZE00000001CDS112507644112507690-
GWHAAZE00000001CDS112507356112507531-
GWHAAZE00000001CDS112507221112507239-
GWHAAZE00000001CDS112506143112506247-
Transcript Sequence

Network for GWHGAAZE004166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13202.7EF-hand_51251460.0012
PF00036.33EF-hand_11942174.40E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13448CML Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf139.196
SRR3591706second leaf102.439
SRR3591707mature leaf97.897
SRR3591708Shoot apex200.078
SRR3591709Stem139.304
SRR3591710White floral bud133.852
SRR3591711White flower126.265
SRR3591712Green floral bud145.905
SRR3591713Yellow flower96.630
SRP173429 SRR8316895Juvenile bud stage 103.631
SRR8316896Juvenile bud stage 127.273
SRR8316897Juvenile bud stage 65.385
SRR8316894Third green stage 43.064
SRR8316900Third green stage 119.124
SRR8316901Third green stage 136.263
SRR8316898Complete white stage 37.735
SRR8316899Complete white stage 171.959
SRR8316903Complete white stage 70.626
SRR8316902Silver flowering stage36.410
SRR8316904Silver flowering stage37.858
SRR8316905Silver flowering stage21.510
SRR8316906Gold flowering stage 60.916
SRR8316907Gold flowering stage 70.348
SRR8316908Gold flowering stage 63.973
SRP132670SRR6706286Control135.911
SRR6706287Light intensity 50%125.900
SRR6706288Light intensity 20%126.616
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1150.197
CNS0095593Slightly white alabastrum(diploid) 2129.883
CNS0095594Slightly white alabastrum(diploid) 3155.754
CNS0095595Whole white alabastrum(diploid) 2128.660
CNS0095596Whole white alabastrum(diploid) 3113.045
CNS0095597Whole white alabastrum(diploid) 4120.745
CNS0095598Silvery flower (diploied) 1153.087
CNS0095599Silvery flower (diploied) 2153.719
CNS0095600Silvery flower (diploied) 3126.796
CNS0095601Golden flower (diploid) 1155.688
CNS0095602Golden flower (diploid) 2141.360
CNS0095603Golden flower (diploid) 3134.811
CNS0095604Slightly white alabastrum(tetraploid) 1143.152
CNS0095605Slightly white alabastrum(tetraploid) 2135.395
CNS0095606Slightly white alabastrum(tetraploid) 3195.665
CNS0095607Whole white alabastrum(tetraploid) 1125.077
CNS0095608Whole white alabastrum(tetraploid) 299.915
CNS0095609Whole white alabastrum(tetraploid) 3114.288
CNS0095610Silvery flower (tetraploid) 186.681
CNS0095611Silvery flower (tetraploid) 286.603
CNS0095612Silvery flower (tetraploid) 387.179
CNS0095613Golden flower (tetraploid) 175.994
CNS0095614Golden flower (tetraploid) 286.396
CNS0095615Golden flower (tetraploid) 373.844
CRA001975CRR073297Stem 1149.623
CRR073298Stem 2134.498
CRR073299Stem 3173.520
CRR073300Leaf 1139.382
CRR073301Leaf 2146.320
CRR073302Leaf 3135.717
CRR073303Juvenile bud 1161.498
CRR073304Juvenile bud 2130.388
CRR073305Juvenile bud 3186.073
CRR073306Third green 1104.226
CRR073307Third green 2102.239
CRR073308Third green 3102.800
CRR073309Second white 196.126
CRR073310Second white 278.203
CRR073311Second white 369.364
CRR073312Silver flowering 182.556
CRR073313Silver flowering 296.456
CRR073314Silver flowering 377.158
CRR073315Gold flowering 155.642
CRR073316Gold flowering 264.807
CRR073317Gold flowering 381.170
CRR073318Tawny withering 1191.188
CRR073319Tawny withering 2169.775
CRR073320Tawny withering 3202.427