Gene detail

Detail information of GWHGAAZE004167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653740.1	0	PREDICTED: DNA helicase INO80 isoform X2 [Vitis vinifera]
COG	YP_004194378.1	3E-55	SNF2-like protein
Swissprot	tr\|Q8RXS6\|INO80_ARATH	0	DNA helicase INO80
trEMBL	tr\|D7THS3\|D7THS3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29799.3}
TAIR10	AT3G57300.1	0	INO80 ortholog

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112537281	112551461	+
GWHAAZE00000001	mRNA	112537281	112551461	+
GWHAAZE00000001	exon	112537281	112537669	+
GWHAAZE00000001	exon	112538161	112538593	+
GWHAAZE00000001	exon	112538709	112538909	+
GWHAAZE00000001	exon	112539103	112539213	+
GWHAAZE00000001	exon	112540336	112540769	+
GWHAAZE00000001	exon	112540906	112541014	+
GWHAAZE00000001	exon	112541115	112541195	+
GWHAAZE00000001	exon	112541649	112541821	+
GWHAAZE00000001	exon	112542281	112542406	+
GWHAAZE00000001	exon	112543273	112543434	+
GWHAAZE00000001	exon	112543735	112543792	+
GWHAAZE00000001	exon	112544126	112544356	+
GWHAAZE00000001	exon	112544923	112545069	+
GWHAAZE00000001	exon	112545429	112545989	+
GWHAAZE00000001	exon	112546964	112547224	+
GWHAAZE00000001	exon	112547347	112547454	+
GWHAAZE00000001	exon	112548067	112548161	+
GWHAAZE00000001	exon	112548976	112549132	+
GWHAAZE00000001	exon	112549756	112549953	+
GWHAAZE00000001	exon	112550545	112550694	+
GWHAAZE00000001	exon	112550858	112551461	+
GWHAAZE00000001	CDS	112537281	112537669	+
GWHAAZE00000001	CDS	112538161	112538593	+
GWHAAZE00000001	CDS	112538709	112538909	+
GWHAAZE00000001	CDS	112539103	112539213	+
GWHAAZE00000001	CDS	112540336	112540769	+
GWHAAZE00000001	CDS	112540906	112541014	+
GWHAAZE00000001	CDS	112541115	112541195	+
GWHAAZE00000001	CDS	112541649	112541821	+
GWHAAZE00000001	CDS	112542281	112542406	+
GWHAAZE00000001	CDS	112543273	112543434	+
GWHAAZE00000001	CDS	112543735	112543792	+
GWHAAZE00000001	CDS	112544126	112544356	+
GWHAAZE00000001	CDS	112544923	112545069	+
GWHAAZE00000001	CDS	112545429	112545989	+
GWHAAZE00000001	CDS	112546964	112547224	+
GWHAAZE00000001	CDS	112547347	112547454	+
GWHAAZE00000001	CDS	112548067	112548161	+
GWHAAZE00000001	CDS	112548976	112549132	+
GWHAAZE00000001	CDS	112549756	112549953	+
GWHAAZE00000001	CDS	112550545	112550694	+
GWHAAZE00000001	CDS	112550858	112551112	+
GWHAAZE00000001	three_prime_UTR	112551113	112551461	+

Transcript Sequence
>GWHTAAZE004173 ATGTTAAAACGCAGTAATGGAATAATGCCGCAAAGGGATTTGAGTTTGGTGAAGAACAAGAAGAGGAATGTATATAGTAGTGACGAGGACGAGAACGGAGAGGGAAGTCACAGTAAGTACATATCAGAGGAGAGGTATAGAACAATGCTTGGGGAACATATTCAGAGGTACAAGAGGAGAATCAATAATTCCTCACCAAGTCCTGCTTTGGCCCGAAGTTCGATGCCTATTACAAAAGGAGGTTCAGGATCCAAGGACCGTAAACCGAGGAATGAGCATCGGGGAGGATTACAGAAAAATGGAACTCTGGATTTTCCTACAGATGTTATTCCGCAAAAGCGGGGAAACTATCATGGAGCAGCTTTTGTACCAGAGTATGTTACAGATAGATCAGTTTGTGAACCTGCTTATTTGGATATCGGGGAAGGCATTGCTTATAGGATCCCTCCGACCTATGAAAAGCTGGCTACATCACTGAACTTGCCGACCATGTCAGATATTATAATGGAAGAGTTTTACCTAAAGGGAACACTGGATTTGGGGTCATTGGCTGCAATGATGGCTGCTGATAGAAGGTTTGGGCCGAAAATCCGTGCAGTGATGGGTGAGCAGAAGCCACAGTATGAATCTCTTCAGGCAAGATTGAAAGCCCAATCGGCTAGTAATCTGGTTCCGAACTTCAGTCTTAAAGTCAGTGATATTGGGTTGGACTCTTCTATCCCAGAAGGGGCAGCTGGTGGAATACGGCGGTCTATCTTGTCGGAGGGTGGTGTTTTACAGATTTATTATGTGAAGGTGTTGGAGAAGGGAGATACATATGAGATTATTGAACGTAGTTTACCCAAGAAGCAAAAGGTACAGAAAGATCCTTCTGTGATTGAGAAGGAGGAAATAGAGAAGATTGGTAAATATTGGGTAAACATAGTAAGGAAAGATATACCGAAACATCACAGGAATTTCACTGGCTTTCACAGAAAGCAACTAATTGATGCCAAGCGGTTCTCGGAAGCCTGTCAACGAGAGGTAAAAATGAAGGTGAGCAGATCTCTTAAATTGATGAGAGGTGCTGGAATTCGGACAAGGAAACTGGCCAGAGACATGTTAGTGTTTTGGAAGAGAGTTGATAAGGAGATGGCGGAAGTGAGGAAAAGAGAGGAAAAAGAAGCTGCTGAGGCTTTAAAGCGTGAACAGGAGCTTCGTGAAGCAAAGAGGCAGCAGCAGAGGCTTAATTTTCTGCTTTCTCAAACGGAACTCTACAGTCACTTCATGCAGAACAAATCAACTGAAGGACCCTCTGATGCTTTGACTATTGGTGATGATGATAGATCAGACGGTCAAGAAGAGCTCTTGACTTCGTTAGAAGCCATGCATGCTGAGGAAGAAGATCCTGAGGAGGCCGAGTTGAAATTAGAGGCTCTGAAAGCTGCTCAAGATGCTGTTTCCAAGCAGAAAAAGATAACGAGTGCATTTGACAGTGAATGTTTGAAGCTGATGCAAGTTAATGAAACTGGGATCCCTGAGCAAGATGCTTCAATATCAGGATCCAGTAACATTGATTTATTGCACCCCTCAACCATGCCTGTAGCATCATCGGTGCAGACACCAGAGTTGTTTAGAGGTTCCCTCAAAGGATATCAGCTAAAAGGCCTCCAGTGGCTTGTAAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCCGATGAGATGGGCCTTGGAAAGACTATCCAAGCAATGGCTTTCTTGGCTCATTTGGCTGAAGAAAAAAATATATGGGGCCCTTTTTTGGTTGTTGCACCAGCATCTGTTTTGAACAACTGGGCTGATGAAATTAGTCGTTTCTGCCCTGACTTGAAAGCTCTTCCATATTGGGGAGGTCTTCCTGAACGGATGATACTTAGGAAGAACATCAACCCAAAACGTCTCTACCGTAGGGAGGCTGGATTTCACATTCTAATCACCAGCTACCAACTGCTAGTGGCCGATGAGAAGTACTTTAGGCGCGTGAAATGGCAATATATGGTACTAGATGAAGCCCAGGCAATTAAAAATGCAACCAGTATAAGATGGAAGACACTGCTTAGTTTTAACTGTCGAAATCGCTTGCTTTTGACGGGTACACCTATTCAGAATAACATGGCTGAGTTATGGGCCCTCTTGCATTTTATTATGCCGACCTTATTTGACAGTCATGAACAATTTAATGAGTGGTTTTCAAAAGGAATCGAGAACCATGCTGAACACGGTGGGACATTAAATGAGCACCAACTTAACAGATTGCATGCTATTCTGAAGCCTTTTATGCTGCGTCGGGTTAAAAAGGACGTGGTTTCTGAGTTGACTGGTAAAACTGAGATTGCAGTGCACTGCAAGCTGAGTTCAAGGCAGCAAGCCTTTTATCAAGCTATAAAGAACAAGATATCTCTTGCTGAGTTGTTTGACAGCAACCGCGGGCATCTTAATGAGAAAAAAATTCTCAACTTGATGAATATTGTTATCCAGCTGAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGAAATGAAGGAAGTACATGCCTTTATTTTGGAGAGATTCCAAATTCTCTTCTTCCACCTCCTTTTGGGGAGTTGGAGGACGTTTATTACTCTGGTAGTCGGAGTCCTATTACTTACAAGATACCAAAACTGATTTACCAAGATGTTCTGCGAAGTTCGGACACACTAATCTCAGCTGTAAGGCACGGAGTCAGCGGCGAGTTGTTTCGGAAAAGTTTAAACATTTTCTCCCCGGAAAATGTTTATCGATCTATGCTCGCACAAGATAGTGGTTCAGATGGGTCTTCTTCTAAAAGTGGAACATTTGGCTTTGCTCACTTGATTGATTTGTCACCAGCTGAGTTGACATTTTTGGCAGCTGGTTCTTGTTTGGAGAGATTATTGTTTTCTATTTTGAGATGGGGCCGGCAATTTCTGGACGGACTCTTAGATTCACTCATGGAAACTGAAGGCGATGATCTCGATTTCAGTAATATTGGGAGGGAAAAAGTACGTGTGGTCACACGCATGTTGCTGATGCCATCAAAGTCAGACACAGATTTACTTAGAAGGAGACTGGCAACAGGCCCAAGGGATGCGCCGTATGAGGCTTTGGTTATTTCGCATGAGGATAGGAGTTTGTCTAACATTAGACTACTTCATTCTACTTACTCTTTCATTCCGAAGACCAGAGCACCCCCTGTCAATGCCCACTGTTCCGATAGAAATTTTACTTACAAAATGCTTGAAGAACTACATCACCCCTGGGTTAAGAGGTTGTTAACCGGGTTTGCACGCACTTCAGTCAGTAATGGTCCCACAAAGCCAAATGGTCCTCCTCACCATTTGATACAAGAGATCGATTCTGAACTTCCTGTTTCACAACCCGCTCTTCAGCTCACGTACAAGATCTTTGGTTCATGTCCACCCATGCAAAGTTTCGATCCTGCAAAGATGTTAACGGATTCGGGTAAGCTTCAAACACTGGATATACTATTGAAACGCTTGCGAGCGGAAAATCACCGCATTTTGCTGTTTGCTCAAATGACCAAAATGCTGAATATTCTTGAGGACTATATGAACTATAGGAAATACAAATATTTAAGGCTTGATGGATCCTCCACAATAATGGACAGGCGAGACATGGTCAACGACTTCCAGAGTCGAAATGACATTTTCGTCTTCTTGCTGAGTACGAGAGCCGGTGGGCTTGGTATAAACTTGACAGCTGCTGACACAGTTATATTCTATGAGAGTGACTGGAATCCAACATTGGATTTACAGGCAATGGATAGAGCTCATCGATTGGGCCAGACTAAAGATGTTACTGTGTACCGATTAATATGTAAAGAGACAGTTGAAGAGAAGATTTTGCAAAGAGCTAGCCAGAAAAACACAGTACAGCAGCTTGTGATGACAGGGGGTCATGTACAGGGCGAACTTTTGGCTCCTGAGGATGTTGTTTCTTTACTTATTGATGACCCCCAGCTGGAGCAGAAACTCAAAGAAATCCCCGCGCAGGCTAGGGATAGACAAAAGAAGAAAGCGGGAACGAAGGGAATACGCGTAGACGAAGAAGGTGCTGCGACTTTTGAAGATCTTACAGAATCTCAGGGTAATGGGTTCGAGCCCTTGCCTGATCTCGAGAAACCAAAGTCTAGTAGTAAGAAGAGAAAATCTGCAGCAGACAAGCAAACTACTACAAAACCAAGGCCTCAAAAAGGTCTGAAAAATGTGGATTCTTCGACTCCCAACTCGGAGTCGGATGATCCCTTAAACAACAGTAATATGCAACAACAGAGACCCAAGCGGTCGAAGAGGCCTACGAAGAGTGTGAACGAGAATCTTGAACCAGCATTTACGGTCACCACCACCACCCCCCGATTGACAAAAGACCCAAGTCAGAACACAACTCTGCCACCTTGAGCTCAATTTTGGGAGTGGAACTCTAGGGAGTTATTTTGGTTGAGACTTGTTTGTAGAAGAAAACAGAGGAAGCAAAATATGTATGGTAGTGTTGTACAGATTATTTATTAGGTTTTTTTTTTTTACCTACCAGATTTGCTGGTCACCGCAGTAGAAATTTTTAGTTATGTATATAGATGACTACTCTCTCTCTCTCTCGTCTGTGCGTGGGGTAAACCTCTCAAATTAGATTAAAGATTTTGCGAACAGTGGAAATGAAAATTTTGTTATTCAAATATAGTTTGTTGTCAATAACACGAATGTAATTATGGAGCTTGTATATATACCTATTCCGTGATTATTCACGTTA

Network for GWHGAAZE004167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13892.7	DBINO	300	428	2.30E-46
PF00176.24	SNF2_N	556	843	8.50E-66
PF00271.32	Helicase_C	1166	1275	4.40E-17

Protein Sequence

>GWHPAAZE004170
MLKRSNGIMPQRDLSLVKNKKRNVYSSDEDENGEGSHSKYISEERYRTMLGEHIQRYKRRINNSSPSPALARSSMPITKGGSGSKDRKPRNEHRGGLQKNGTLDFPTDVIPQKRGNYHGAAFVPEYVTDRSVCEPAYLDIGEGIAYRIPPTYEKLATSLNLPTMSDIIMEEFYLKGTLDLGSLAAMMAADRRFGPKIRAVMGEQKPQYESLQARLKAQSASNLVPNFSLKVSDIGLDSSIPEGAAGGIRRSILSEGGVLQIYYVKVLEKGDTYEIIERSLPKKQKVQKDPSVIEKEEIEKIGKYWVNIVRKDIPKHHRNFTGFHRKQLIDAKRFSEACQREVKMKVSRSLKLMRGAGIRTRKLARDMLVFWKRVDKEMAEVRKREEKEAAEALKREQELREAKRQQQRLNFLLSQTELYSHFMQNKSTEGPSDALTIGDDDRSDGQEELLTSLEAMHAEEEDPEEAELKLEALKAAQDAVSKQKKITSAFDSECLKLMQVNETGIPEQDASISGSSNIDLLHPSTMPVASSVQTPELFRGSLKGYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKALPYWGGLPERMILRKNINPKRLYRREAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKNATSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTGKTEIAVHCKLSSRQQAFYQAIKNKISLAELFDSNRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTCLYFGEIPNSLLPPPFGELEDVYYSGSRSPITYKIPKLIYQDVLRSSDTLISAVRHGVSGELFRKSLNIFSPENVYRSMLAQDSGSDGSSSKSGTFGFAHLIDLSPAELTFLAAGSCLERLLFSILRWGRQFLDGLLDSLMETEGDDLDFSNIGREKVRVVTRMLLMPSKSDTDLLRRRLATGPRDAPYEALVISHEDRSLSNIRLLHSTYSFIPKTRAPPVNAHCSDRNFTYKMLEELHHPWVKRLLTGFARTSVSNGPTKPNGPPHHLIQEIDSELPVSQPALQLTYKIFGSCPPMQSFDPAKMLTDSGKLQTLDILLKRLRAENHRILLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVNDFQSRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGELLAPEDVVSLLIDDPQLEQKLKEIPAQARDRQKKKAGTKGIRVDEEGAATFEDLTESQGNGFEPLPDLEKPKSSSKKRKSAADKQTTTKPRPQKGLKNVDSSTPNSESDDPLNNSNMQQQRPKRSKRPTKSVNENLEPAFTVTTTTPRLTKDPSQNTTLPP

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.123
	SRR3591706	second leaf	13.406
	SRR3591707	mature leaf	16.236
	SRR3591708	Shoot apex	18.924
	SRR3591709	Stem	17.484
	SRR3591710	White floral bud	16.944
	SRR3591711	White flower	16.870
	SRR3591712	Green floral bud	17.394
	SRR3591713	Yellow flower	15.193
SRP173429	SRR8316895	Juvenile bud stage	9.791
	SRR8316896	Juvenile bud stage	13.210
	SRR8316897	Juvenile bud stage	7.794
	SRR8316894	Third green stage	5.723
	SRR8316900	Third green stage	13.737
	SRR8316901	Third green stage	13.900
	SRR8316898	Complete white stage	5.033
	SRR8316899	Complete white stage	16.904
	SRR8316903	Complete white stage	12.164
	SRR8316902	Silver flowering stage	4.908
	SRR8316904	Silver flowering stage	8.713
	SRR8316905	Silver flowering stage	3.390
	SRR8316906	Gold flowering stage	12.798
	SRR8316907	Gold flowering stage	10.206
	SRR8316908	Gold flowering stage	12.617
SRP132670	SRR6706286	Control	13.445
	SRR6706287	Light intensity 50%	13.889
	SRR6706288	Light intensity 20%	14.968
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.961
	CNS0095593	Slightly white alabastrum(diploid) 2	8.576
	CNS0095594	Slightly white alabastrum(diploid) 3	8.866
	CNS0095595	Whole white alabastrum(diploid) 2	8.281
	CNS0095596	Whole white alabastrum(diploid) 3	7.208
	CNS0095597	Whole white alabastrum(diploid) 4	8.429
	CNS0095598	Silvery flower (diploied) 1	12.596
	CNS0095599	Silvery flower (diploied) 2	8.650
	CNS0095600	Silvery flower (diploied) 3	16.243
	CNS0095601	Golden flower (diploid) 1	12.344
	CNS0095602	Golden flower (diploid) 2	18.165
	CNS0095603	Golden flower (diploid) 3	16.887
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.813
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.021
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.945
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.044
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.974
	CNS0095610	Silvery flower (tetraploid) 1	16.195
	CNS0095611	Silvery flower (tetraploid) 2	15.749
	CNS0095612	Silvery flower (tetraploid) 3	13.870
	CNS0095613	Golden flower (tetraploid) 1	8.664
	CNS0095614	Golden flower (tetraploid) 2	14.706
	CNS0095615	Golden flower (tetraploid) 3	20.363
CRA001975	CRR073297	Stem 1	18.866
	CRR073298	Stem 2	17.369
	CRR073299	Stem 3	13.326
	CRR073300	Leaf 1	18.281
	CRR073301	Leaf 2	18.384
	CRR073302	Leaf 3	11.799
	CRR073303	Juvenile bud 1	14.468
	CRR073304	Juvenile bud 2	9.115
	CRR073305	Juvenile bud 3	19.925
	CRR073306	Third green 1	3.397
	CRR073307	Third green 2	4.008
	CRR073308	Third green 3	5.744
	CRR073309	Second white 1	3.538
	CRR073310	Second white 2	8.183
	CRR073311	Second white 3	7.391
	CRR073312	Silver flowering 1	6.711
	CRR073313	Silver flowering 2	5.558
	CRR073314	Silver flowering 3	5.783
	CRR073315	Gold flowering 1	8.858
	CRR073316	Gold flowering 2	16.919
	CRR073317	Gold flowering 3	6.682
	CRR073318	Tawny withering 1	14.916
	CRR073319	Tawny withering 2	14.438
	CRR073320	Tawny withering 3	13.624