Detail information of GWHGAAZE004174


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284404.10PREDICTED: nuclear pore complex protein NUP93A [Vitis vinifera]
Swissprottr|O22224|NP93A_ARATH0Nuclear pore complex protein NUP93A {ECO:0000303|PubMed:21189294}
trEMBLtr|D7THT1|D7THT1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI29807.3}
TAIR10AT2G41620.10Nucleoporin interacting component (Nup93/Nic96-like) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene112671838112686795-
GWHAAZE00000001mRNA112671838112686795-
GWHAAZE00000001exon112671838112672147-
GWHAAZE00000001exon112673477112673658-
GWHAAZE00000001exon112677463112678365-
GWHAAZE00000001exon112678451112678537-
GWHAAZE00000001exon112679598112679681-
GWHAAZE00000001exon112679808112679861-
GWHAAZE00000001exon112680117112680251-
GWHAAZE00000001exon112680388112680483-
GWHAAZE00000001exon112680646112680915-
GWHAAZE00000001exon112681823112681912-
GWHAAZE00000001exon112682996112683055-
GWHAAZE00000001exon112685242112685308-
GWHAAZE00000001exon112686419112686510-
GWHAAZE00000001exon112686595112686795-
GWHAAZE00000001five_prime_UTR112686697112686795-
GWHAAZE00000001CDS112686595112686696-
GWHAAZE00000001CDS112686419112686510-
GWHAAZE00000001CDS112685242112685308-
GWHAAZE00000001CDS112682996112683055-
GWHAAZE00000001CDS112681823112681912-
GWHAAZE00000001CDS112680646112680915-
GWHAAZE00000001CDS112680388112680483-
GWHAAZE00000001CDS112680117112680251-
GWHAAZE00000001CDS112679808112679861-
GWHAAZE00000001CDS112679598112679681-
GWHAAZE00000001CDS112678451112678537-
GWHAAZE00000001CDS112677463112678365-
GWHAAZE00000001CDS112673477112673658-
GWHAAZE00000001CDS112671838112672147-
Transcript Sequence

Network for GWHGAAZE004174

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04097.15Nic962488248.20E-105
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14309NUP93, NIC96 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005643cellular_componentnuclear pore
GO:0017056molecular_functionstructural constituent of nuclear pore

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.212
SRR3591706second leaf14.117
SRR3591707mature leaf9.949
SRR3591708Shoot apex39.871
SRR3591709Stem19.451
SRR3591710White floral bud22.861
SRR3591711White flower25.054
SRR3591712Green floral bud30.648
SRR3591713Yellow flower17.215
SRP173429 SRR8316895Juvenile bud stage 10.861
SRR8316896Juvenile bud stage 14.805
SRR8316897Juvenile bud stage 1.121
SRR8316894Third green stage 5.429
SRR8316900Third green stage 14.417
SRR8316901Third green stage 13.724
SRR8316898Complete white stage 3.264
SRR8316899Complete white stage 15.749
SRR8316903Complete white stage 7.016
SRR8316902Silver flowering stage3.944
SRR8316904Silver flowering stage6.318
SRR8316905Silver flowering stage2.840
SRR8316906Gold flowering stage 8.732
SRR8316907Gold flowering stage 8.886
SRR8316908Gold flowering stage 4.910
SRP132670SRR6706286Control15.708
SRR6706287Light intensity 50%15.751
SRR6706288Light intensity 20%17.987
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.196
CNS0095593Slightly white alabastrum(diploid) 211.793
CNS0095594Slightly white alabastrum(diploid) 310.421
CNS0095595Whole white alabastrum(diploid) 210.409
CNS0095596Whole white alabastrum(diploid) 312.257
CNS0095597Whole white alabastrum(diploid) 410.047
CNS0095598Silvery flower (diploied) 113.363
CNS0095599Silvery flower (diploied) 210.499
CNS0095600Silvery flower (diploied) 314.878
CNS0095601Golden flower (diploid) 111.512
CNS0095602Golden flower (diploid) 215.230
CNS0095603Golden flower (diploid) 313.496
CNS0095604Slightly white alabastrum(tetraploid) 12.605
CNS0095605Slightly white alabastrum(tetraploid) 22.245
CNS0095606Slightly white alabastrum(tetraploid) 34.138
CNS0095607Whole white alabastrum(tetraploid) 12.531
CNS0095608Whole white alabastrum(tetraploid) 22.924
CNS0095609Whole white alabastrum(tetraploid) 33.899
CNS0095610Silvery flower (tetraploid) 16.056
CNS0095611Silvery flower (tetraploid) 24.337
CNS0095612Silvery flower (tetraploid) 34.001
CNS0095613Golden flower (tetraploid) 12.313
CNS0095614Golden flower (tetraploid) 25.084
CNS0095615Golden flower (tetraploid) 33.628
CRA001975CRR073297Stem 118.626
CRR073298Stem 217.461
CRR073299Stem 313.068
CRR073300Leaf 120.744
CRR073301Leaf 219.323
CRR073302Leaf 313.158
CRR073303Juvenile bud 113.084
CRR073304Juvenile bud 28.877
CRR073305Juvenile bud 319.363
CRR073306Third green 12.481
CRR073307Third green 22.204
CRR073308Third green 32.716
CRR073309Second white 14.241
CRR073310Second white 25.095
CRR073311Second white 35.398
CRR073312Silver flowering 12.712
CRR073313Silver flowering 22.674
CRR073314Silver flowering 33.655
CRR073315Gold flowering 14.825
CRR073316Gold flowering 27.320
CRR073317Gold flowering 33.903
CRR073318Tawny withering 17.226
CRR073319Tawny withering 29.301
CRR073320Tawny withering 37.457