Gene detail

Detail information of GWHGAAZE004186

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284404.1	PREDICTED: nuclear pore complex protein NUP93A [Vitis vinifera]
Swissprot	tr\|O22224\|NP93A_ARATH	Nuclear pore complex protein NUP93A {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|D7THT1\|D7THT1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29807.3}
TAIR10	AT2G41620.1	Nucleoporin interacting component (Nup93/Nic96-like) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112828236	112843237	-
GWHAAZE00000001	mRNA	112828236	112843237	-
GWHAAZE00000001	exon	112828236	112828545	-
GWHAAZE00000001	exon	112829878	112830059	-
GWHAAZE00000001	exon	112833911	112834813	-
GWHAAZE00000001	exon	112834900	112834986	-
GWHAAZE00000001	exon	112836063	112836146	-
GWHAAZE00000001	exon	112836275	112836328	-
GWHAAZE00000001	exon	112836590	112836724	-
GWHAAZE00000001	exon	112836861	112836956	-
GWHAAZE00000001	exon	112837112	112837381	-
GWHAAZE00000001	exon	112838290	112838379	-
GWHAAZE00000001	exon	112839461	112839520	-
GWHAAZE00000001	exon	112841659	112841725	-
GWHAAZE00000001	exon	112842850	112842941	-
GWHAAZE00000001	exon	112843028	112843140	-
GWHAAZE00000001	exon	112843163	112843237	-
GWHAAZE00000001	five_prime_UTR	112843164	112843237	-
GWHAAZE00000001	CDS	112843163	112843163	-
GWHAAZE00000001	CDS	112843028	112843140	-
GWHAAZE00000001	CDS	112842850	112842941	-
GWHAAZE00000001	CDS	112841659	112841725	-
GWHAAZE00000001	CDS	112839461	112839520	-
GWHAAZE00000001	CDS	112838290	112838379	-
GWHAAZE00000001	CDS	112837112	112837381	-
GWHAAZE00000001	CDS	112836861	112836956	-
GWHAAZE00000001	CDS	112836590	112836724	-
GWHAAZE00000001	CDS	112836275	112836328	-
GWHAAZE00000001	CDS	112836063	112836146	-
GWHAAZE00000001	CDS	112834900	112834986	-
GWHAAZE00000001	CDS	112833911	112834813	-
GWHAAZE00000001	CDS	112829878	112830059	-
GWHAAZE00000001	CDS	112828236	112828545	-

Transcript Sequence
>GWHTAAZE004192 AGCTCTTCGTAGCTTATGTAAATTCCGGTCATCAATCATTACAGTGATATCCTCATATACTAGTAATTGCAGCAAGAGAGAGAGAAATGGCCAGCGATGCGGATATGAGTAGCTGGACTGATCTTCTCCATTCATCATCGAAGCTCGTTGAACAAGCTGCTCCTTCTGCTCAGTTCCCTCCTCTTCAGAGGAACTTGGATCAGTTAGAAGCGTTGTCAAAAAAGCTCAAGTCTAAAACCCTAAGAGCTGAAGCTCCTTCTCAATCTATTGCAGCTACCAGGCTACTCGCTCGTGAGGGAATAAACGCAGAGCAGCTTGCTCGGGATCTCAAGTCCTTTGAACTAAAGACAACATTTGAGGATGTTTTCCCCTCCGAGGCAACAAGCGTTGAGGAGTATCTGCAACAGGTCCATGAAATGGCAATGGTCTCAGCTGTTCAGGGAGCACAGAAGGATAATCTGAAAAGTTTTAATGACTATATGATGACAGTTTTGGAGGAGGATTGGCAAAGGGAAAAAAGGGACTTCCTTCACAGCCTGAGCCGGATTTCAACATTACCTAGGACTAGTATGGGTGATTCAAGCTCTGGGGGTACTCGTCCAGGTCAACTAGTTTCTCTAACTTCTAGCCCTCAAATTTCTTCTGGTCCATCTAGCATGGAGCTTGCACCGCTTGCTGATAAGCCTCTCGTTGAGAAAAAGGCTGCAGCCTATGCTGAGGTGGTGAAGAATCTCAATGATGCACGACAACGTGGCTTACCATTTAAACCTTCTACCGCTTTCAAGAGGGCATATGAAAGCTTAGGCCTGGACACATCTGGTGGGAAATCAGTTAGCATGCAAAAGATATGGCACTTATTGCAGACATTGGTGGGTGAGCATTCAGCTGTTCAACGAAACGTTTCGAGGAAAATGTCACTAGTAATTGGTGCCAGGCGTCACCTTGAATGGGGACATGAGAAATATGTTATAGAAACGATACAAAGCCATCCTGCACAGGCTGCTCTTGGTGGAGCTGTCGGAAATCTGCAACGAATCCGTGCCTTCCTTCGGATTCGCTTAAGGGACTATGGAGTTCTTGATTTTGATGCAGGGGATGCCCGTAGGCAGCCTCCTATTGATACCACTTGGCAGCAGATTTATTTCTGCTTGAGAACGGGGTATTATGATGAAGCGAGAAATATTGCATCCTCATCTCGTGTTTCAAACCAGTTTGCTCCTCAGCTTGCAGAGTGGATTACCAATGGAGGTATGGTATCAGCAGAGACTTCAGCTGCTGCTACAGAGGAATGTGAGAAAATGTTGAGGATGGGTGATCGAGTGGGTCGATCTGCATACGACAAGAAAAAGTTACTTTTATATGCTATTGTATCTGGTTCTCGCAGGCAGATTGACCGTCTGCTTAGAGAACAACCTACACTATTCAATACCATAGAGGACTTCTTGTGGTTCAAATTGTCTGCTGTACGAGATATTAGTGGCGGGTCCTCTTCTGCTGTCCTGAACGACGGATTGTTGCCCTACAGCTTGGATGATTTACAGGGTTACCTAAACAAATTTGAACCGTCATATTATACCAAAAACGGAAAGGATCCTCTTGTCTATCCATATGTATTGCTTCTAAGCATACAGTTGCTACCGGCTGTTCTGTATTTGTACAAGGATGTGGGAGACGAGGGTTATAAGATCGATGCTGCCCATATATCTATCGTATTGGCAGATCATGGGATTCTCTCTGAAGGTGCTGGGGCAGGGGTGAAATCTGGGGTTATGGATGCTTATGCGGAGATATCGAGCATAATTAGGCAGTACGGTTCAGTGTATCTGCGTCATGGTAATCTTTCAATGGCATTGGAATATTATGTACAAGCTGCTGCAGCAGTGGGCGGTGGACAGTTGTCGTGGACTGGGAGAAGTAATGTGGATCAGCAAAGGCAGAGAACTTTGATGCTGAAGCAGCTGCTTATGGAGATTCTGTTACGCGATGGTGGAATCTATATTTTACTTGGTCCAAGAGGTGCAGGGGAAGAAGGTGAACTGTCGAGATTTTTGATAGATGGTCAAGTTAGACAACAGTTTCTGCTTGAAGCTGCTCGTCAGTGTCAGGAAGCTGGGCTGTATGACAAGTCTATTGAAATTCAGAAGAGGATTGGGGCATTTTCAACGGCATTGGATACAATAAATAAATGTCTCTCTGAAGCAATTTGTGCTCTATCACGTGGCAGATTGGACGGTGAAAGCAGGACTGCTGGGCTTGTTAATTCTGGAAACGAGCTTTTGGAGACATTCAAATATTATCCTGAAGTCAGCCTTCACGAGAGAGAGCATGTTTTGGAGCAACAAACTGTGTTGAGACAGCTGGAGACAATTTTGTATATCCATAAATTGGCAAGACTTGGTAATCATCTAGATGCTCTGAGGGAGGTAGCCAAACTCCCATTTCTTCCTTTAGATCCGCGATCACCGGATATAGCGTCGGATATGTTCCATAATTTATCTCCCCATGTCCAAGCTTGTGTACCAGACCTCCTTAAGGTTGCTCTTAATTGTTTGGACAATGTGACAGATTCTGATGGATCTCTTCGTGCCTTGAGGACAAAGGTACGTTCACGAGACTAA

Network for GWHGAAZE004186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0228

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04097.15	Nic96	252	828	1.60E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14309	NUP93, NIC96	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005643	cellular_component	nuclear pore
GO:0017056	molecular_function	structural constituent of nuclear pore

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.049
	SRR3591706	second leaf	3.136
	SRR3591707	mature leaf	2.948
	SRR3591708	Shoot apex	9.988
	SRR3591709	Stem	5.495
	SRR3591710	White floral bud	6.002
	SRR3591711	White flower	6.947
	SRR3591712	Green floral bud	8.405
	SRR3591713	Yellow flower	3.942
SRP173429	SRR8316895	Juvenile bud stage	11.779
	SRR8316896	Juvenile bud stage	16.137
	SRR8316897	Juvenile bud stage	14.094
	SRR8316894	Third green stage	6.863
	SRR8316900	Third green stage	16.982
	SRR8316901	Third green stage	16.081
	SRR8316898	Complete white stage	6.793
	SRR8316899	Complete white stage	21.061
	SRR8316903	Complete white stage	12.745
	SRR8316902	Silver flowering stage	8.989
	SRR8316904	Silver flowering stage	12.349
	SRR8316905	Silver flowering stage	6.366
	SRR8316906	Gold flowering stage	20.463
	SRR8316907	Gold flowering stage	20.399
	SRR8316908	Gold flowering stage	33.435
SRP132670	SRR6706286	Control	18.703
	SRR6706287	Light intensity 50%	18.581
	SRR6706288	Light intensity 20%	19.605
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.518
	CNS0095593	Slightly white alabastrum(diploid) 2	11.210
	CNS0095594	Slightly white alabastrum(diploid) 3	11.026
	CNS0095595	Whole white alabastrum(diploid) 2	11.348
	CNS0095596	Whole white alabastrum(diploid) 3	9.894
	CNS0095597	Whole white alabastrum(diploid) 4	11.461
	CNS0095598	Silvery flower (diploied) 1	13.372
	CNS0095599	Silvery flower (diploied) 2	12.610
	CNS0095600	Silvery flower (diploied) 3	21.009
	CNS0095601	Golden flower (diploid) 1	14.313
	CNS0095602	Golden flower (diploid) 2	19.860
	CNS0095603	Golden flower (diploid) 3	18.745
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.231
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.963
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.266
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.578
	CNS0095610	Silvery flower (tetraploid) 1	38.669
	CNS0095611	Silvery flower (tetraploid) 2	37.446
	CNS0095612	Silvery flower (tetraploid) 3	36.096
	CNS0095613	Golden flower (tetraploid) 1	18.033
	CNS0095614	Golden flower (tetraploid) 2	33.878
	CNS0095615	Golden flower (tetraploid) 3	31.488
CRA001975	CRR073297	Stem 1	17.904
	CRR073298	Stem 2	15.839
	CRR073299	Stem 3	15.889
	CRR073300	Leaf 1	18.656
	CRR073301	Leaf 2	15.386
	CRR073302	Leaf 3	17.663
	CRR073303	Juvenile bud 1	15.635
	CRR073304	Juvenile bud 2	10.130
	CRR073305	Juvenile bud 3	21.109
	CRR073306	Third green 1	7.386
	CRR073307	Third green 2	5.309
	CRR073308	Third green 3	7.707
	CRR073309	Second white 1	10.489
	CRR073310	Second white 2	10.047
	CRR073311	Second white 3	12.010
	CRR073312	Silver flowering 1	9.666
	CRR073313	Silver flowering 2	10.784
	CRR073314	Silver flowering 3	9.508
	CRR073315	Gold flowering 1	7.846
	CRR073316	Gold flowering 2	10.819
	CRR073317	Gold flowering 3	6.043
	CRR073318	Tawny withering 1	9.886
	CRR073319	Tawny withering 2	12.011
	CRR073320	Tawny withering 3	12.231