Gene detail

Detail information of GWHGAAZE004200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAJ53233.1	0	JHL06P13.14 [Jatropha curcas]
COG	YP_001522505.1	4E-12	WD repeat-containing protein
Swissprot	tr\|O81825\|DRL28_ARATH	2E-72	Probable disease resistance protein At4g27220
trEMBL	tr\|E6NUC3\|E6NUC3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP37106.1}
TAIR10	AT4G27220.1	4E-69	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113019447	113023871	-
GWHAAZE00000001	mRNA	113019447	113023871	-
GWHAAZE00000001	exon	113021031	113023871	-
GWHAAZE00000001	exon	113019447	113020130	-
GWHAAZE00000001	CDS	113021031	113023871	-
GWHAAZE00000001	CDS	113019447	113020130	-

Transcript Sequence
>GWHTAAZE004206 ATGGCTGAGCGAATTGCATTAATTGTATTTGAGAAAGTTGCAGAAAAGGTGGTGGATAAAATTTGGCGCCAGTTTTCATATATATTTTGTTACAACAGAAACATTACAAATATGACTGATGGAGTTCAGGATCTTCATAATAAGAGTGTCGATGTGAAGTTATTGGTTGAGGGGAGCAAAAGGAATTTACAAGTTATTGCGACTAATGTTGAGGTTTGGCTGAGGAATGTGGAAGAAATTGAGAAGGCGGCATCTGAAGTTGTTGAAGGTACAGAAAAAGTTAAAAATGGGTGTTTGAATGGGTGGTGTCCTAATCTGAAACATCGATACTTGTTGAGCAGGAAAGCTGTAAAGCAGACTATGGTTGTTCTTAAACTCAAAGAAGAAGGCGCAGATTTCACTCAATTGGCTTACCCTGCACCTCCAACAAGTATGACAGCTTCTACATCAAGAATTTGTTTTGAGTTCTTCGAATCCCGGATTTCAAAGACGAAAGAAATCATCGAAGCCCTGAAGAATAGCAAAATCTACAAGATAGGGATATGTGGTTTAGGTGGTGTGGGGAAGACACGGATGGTGAAAGAAATTCGAGAAAGAGCAATAGTCGAGAATCTATTTGATGAGGTTGCAATGGCGGTTGTGTCCCAAAATCAAGATTTGGTGAAGATTCAAGATCAACTTGCAAGTGCGTTAGATTTGAAATTAGACAAGACGAGCAGTACTTATGATAGAGGGACACGGCTTCAGGAAAGACTGAAGCAAGACAGAAGCACTCTCATAATATTGGATGATGTTTGGGAAGAACTTGACCTTGGAGAACTCGGAATTCCTGTCGGAGGTGAAGGTGTGAGCAAGGGGTGCAAAGTTTTACTAACATCAAGAAATGAGCGTGTCTGTGTTACAATGGGAATTCAAGAGAATTTTACGGTCCAACCCTTGTCTGACCAGGAAGCCTGGGATCTTTTCAAAGAGAAGGTAGGAGATATTGTGGAGACTAGGGATCTACATTCCATTGCAAAAAAAGTCGTGAATGAGTGTGGACGTCTGCCACTTGCCCTTATAACAGTTGGGAGTGCACTGAAAGGTAGAGAGAAGTATGTTTGGAAAGATGCACTTGAGCAGCTGAAAACCTCTACAGTAACTAATATTGAAGGAATGGATACAAAGGTGTACTCAACCCTACGCCTGAGTTACGACTATTTGGAAAGAAACCAGATTTCCACCAGTAAAAAGGGAAGCAACGAAATCCAGCGGTTATTTCTGCTATGTTGTCTGTTCCCAGAAGATTATCATATTCCAATTGAATGCTTGGTCAGATATGCTTGGGGGCTAAGGTTGTCTAAAGATGTTAAGAACTTGGAAGCGACAAGAAACAGAATAAATTCAATGGTTGATCGACTAAAAAGTTGTTATTTACTGTTAGCCAGTGATATGGAGGGGCATGTGAAAATGCATGATGTTATTCGCGACTTTGGTTTAATAGAAGCATCCAGCGGTGAGAATGTTTATCTGGTTAGACATGATGCCGAATTGAAAGAGTTGCCCCAAAATGATACAATGATTGAACCTTACACTGCCATCTCAATTGGTACCAGAGAAAAGTTTGAGTTGCCCACTGGACTAAATTGTCCAAAGATTCAGATTTTGAAGCTTGTCACAAAAGGTTCGGTTCAAATATCTAGAGATTATTTTGGTGGAATGAAAGAACTCAAAGTTATTTCTTTCAAAGGGAAATATGTTGATTTTGCACATATGGTGGTTGAATCTCCTCCAAAAGCAGTTCAATTCTTGAGCAATGTTCGAACATTGTGTCTAGAATTTTGCCGATTTAGCACAAATATATACCTGGTTGGAAGCCTAGAAAAATTGGAAATACTGAGCTTTTTTGAATCTGAGATTGATGTGTTGCCTAGAGAAGTAGGGCAACTCATTAATCTCAAGTTGTTAGATCTGAGGTGTGACGTGGGAATGATCGCTCCAGGTGTATTGTCATGCTTGAGTAAACTGGAAGAGCTGTACATGGGAGATTACTTCCACGGGGAGGGGGTTGAGGAACGCAATCAAGGGCACTGCGCAAGAGTTACAGAGATATGCTCATTGTCTTGTCTAAAGACTTTACAAATTTCCATGTTAAAGCCGGAGCTCCTCTTAAAGTTAAAGGACTTTCCGTTTGAGAAGTTGAAAAGATTCAAAATTCTAGTATCTACTCATAGGAGAGATTATTGTGAATATGAATTCCCAAACCAACTGAGATTGAATAAGGTTGATGCAGAAACGACTTTAGAGACCAACATTTGTGGCTTAATGAGTAGATCCAAACTCCTTGATTTATCGTATTTGAAGGGTTTAAGCAGCTTTGTCAAACAGTTGGACACGGTGGGCTTTATGAATTTGGAAGAACTGTTTATGTCTGCTAATGATGATATGATAGAGTTGTTCAATGGAAATCTTCTTGCAGGTTCATTGGGCAGACTAGAACACGTAAGACTAGATTTTCTAAGTGCACTGAGGCATTTTTGGAGTGGTCCCATTCAACCTCCATGCCTTCTCAACCTAAAAGTTCTTAAACTTTGTTGGTGTGAGGCTATAACAAGTCTGTTTTCACCGTCTGTAGTTGGATGCCTGAGACAACTCCAAAGACTTGAAATACACTATTGTGAGATGCTTGAAGAAATTGTTTCCAAAGATGGAGCCAACTACAATAAGGATGCAAAAAAATTGATTCAATTCCCAAAACTGAACTTCTTAGATCTATACAAACTACCAAGCCTTAATAGCTTCGTCCCAATATCAGATATTTCTGGCTCTGAAAATAACTGTGATGGATCCTTATTCAACGAGGTTTTATTACCTAGCATGGAGAATCTTGAGAAAGTTCGAGTAAGCTGCTGTGATTTGGTGGAAACGTTGTTTGACTTTGAGGGGCTAGCGCTAGAGTTTCCCGGAGAAGCGAACATCGTGCTTGGTCAGCTGCATTCAATTGAGCTATTTAGTCTATACAAGCTAACACATATATGGAAGAATGTTCCCAAAGGATTTCTTCAAGGCTTCCAAAACCTCACATCACTGGTTGTCCAATACTGTGGCAGCATGAGCTATCTATTCTCTCCTTGCATTGCCAAATTACTTGTGAATCTGGGAACCATAAAACTTCAGGATTGCAAGATGATGGAAGTGGTTATTCAAAGTGAAGAAAACGACTGTCCTGAGATTGAGATTGAGACGATGACGGATAAAATCGTGTTCCCTTGTTTACGTTGGCTAGAACTTGAAGATCTCAAATATCTAGCAGCATTCTGCCGTGGAAAACATGCTATTGAATTCCCATCACTAGTTCAAGTTTTAATTGCTAAATGCCCCAAGATGGAGATTTTCTGTTCCGGATCACTAAGCGCACCAAAGCTTGAGGCTGTATGCTCGAGAAAGAAGCGCTATGTTTGGATGGGCGATCTCAATGTTACCATAAGCCACAGAAATGAAAGGTACGACGAGTTCCTACCTCTTCCAACATTTTTTAATGGAGTA

Network for GWHGAAZE004200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0003

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	165	399	3.20E-40

Protein Sequence

>GWHPAAZE004203
MAERIALIVFEKVAEKVVDKIWRQFSYIFCYNRNITNMTDGVQDLHNKSVDVKLLVEGSKRNLQVIATNVEVWLRNVEEIEKAASEVVEGTEKVKNGCLNGWCPNLKHRYLLSRKAVKQTMVVLKLKEEGADFTQLAYPAPPTSMTASTSRICFEFFESRISKTKEIIEALKNSKIYKIGICGLGGVGKTRMVKEIRERAIVENLFDEVAMAVVSQNQDLVKIQDQLASALDLKLDKTSSTYDRGTRLQERLKQDRSTLIILDDVWEELDLGELGIPVGGEGVSKGCKVLLTSRNERVCVTMGIQENFTVQPLSDQEAWDLFKEKVGDIVETRDLHSIAKKVVNECGRLPLALITVGSALKGREKYVWKDALEQLKTSTVTNIEGMDTKVYSTLRLSYDYLERNQISTSKKGSNEIQRLFLLCCLFPEDYHIPIECLVRYAWGLRLSKDVKNLEATRNRINSMVDRLKSCYLLLASDMEGHVKMHDVIRDFGLIEASSGENVYLVRHDAELKELPQNDTMIEPYTAISIGTREKFELPTGLNCPKIQILKLVTKGSVQISRDYFGGMKELKVISFKGKYVDFAHMVVESPPKAVQFLSNVRTLCLEFCRFSTNIYLVGSLEKLEILSFFESEIDVLPREVGQLINLKLLDLRCDVGMIAPGVLSCLSKLEELYMGDYFHGEGVEERNQGHCARVTEICSLSCLKTLQISMLKPELLLKLKDFPFEKLKRFKILVSTHRRDYCEYEFPNQLRLNKVDAETTLETNICGLMSRSKLLDLSYLKGLSSFVKQLDTVGFMNLEELFMSANDDMIELFNGNLLAGSLGRLEHVRLDFLSALRHFWSGPIQPPCLLNLKVLKLCWCEAITSLFSPSVVGCLRQLQRLEIHYCEMLEEIVSKDGANYNKDAKKLIQFPKLNFLDLYKLPSLNSFVPISDISGSENNCDGSLFNEVLLPSMENLEKVRVSCCDLVETLFDFEGLALEFPGEANIVLGQLHSIELFSLYKLTHIWKNVPKGFLQGFQNLTSLVVQYCGSMSYLFSPCIAKLLVNLGTIKLQDCKMMEVVIQSEENDCPEIEIETMTDKIVFPCLRWLELEDLKYLAAFCRGKHAIEFPSLVQVLIAKCPKMEIFCSGSLSAPKLEAVCSRKKRYVWMGDLNVTISHRNERYDEFLPLPTFFNGV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.216
	SRR3591706	second leaf	1.360
	SRR3591707	mature leaf	2.613
	SRR3591708	Shoot apex	2.307
	SRR3591709	Stem	2.435
	SRR3591710	White floral bud	1.442
	SRR3591711	White flower	1.271
	SRR3591712	Green floral bud	1.345
	SRR3591713	Yellow flower	0.913
SRP173429	SRR8316895	Juvenile bud stage	0.706
	SRR8316896	Juvenile bud stage	1.000
	SRR8316897	Juvenile bud stage	0.046
	SRR8316894	Third green stage	0.711
	SRR8316900	Third green stage	1.491
	SRR8316901	Third green stage	0.962
	SRR8316898	Complete white stage	0.990
	SRR8316899	Complete white stage	1.609
	SRR8316903	Complete white stage	1.723
	SRR8316902	Silver flowering stage	1.049
	SRR8316904	Silver flowering stage	1.766
	SRR8316905	Silver flowering stage	0.721
	SRR8316906	Gold flowering stage	1.942
	SRR8316907	Gold flowering stage	2.337
	SRR8316908	Gold flowering stage	1.024
SRP132670	SRR6706286	Control	0.659
	SRR6706287	Light intensity 50%	0.756
	SRR6706288	Light intensity 20%	0.822
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.558
	CNS0095593	Slightly white alabastrum(diploid) 2	0.607
	CNS0095594	Slightly white alabastrum(diploid) 3	0.395
	CNS0095595	Whole white alabastrum(diploid) 2	0.738
	CNS0095596	Whole white alabastrum(diploid) 3	0.318
	CNS0095597	Whole white alabastrum(diploid) 4	0.525
	CNS0095598	Silvery flower (diploied) 1	1.228
	CNS0095599	Silvery flower (diploied) 2	1.118
	CNS0095600	Silvery flower (diploied) 3	2.578
	CNS0095601	Golden flower (diploid) 1	1.158
	CNS0095602	Golden flower (diploid) 2	2.120
	CNS0095603	Golden flower (diploid) 3	2.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.150
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.664
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.350
	CNS0095610	Silvery flower (tetraploid) 1	3.403
	CNS0095611	Silvery flower (tetraploid) 2	3.044
	CNS0095612	Silvery flower (tetraploid) 3	3.810
	CNS0095613	Golden flower (tetraploid) 1	1.246
	CNS0095614	Golden flower (tetraploid) 2	3.136
	CNS0095615	Golden flower (tetraploid) 3	3.406
CRA001975	CRR073297	Stem 1	1.329
	CRR073298	Stem 2	1.098
	CRR073299	Stem 3	0.565
	CRR073300	Leaf 1	1.788
	CRR073301	Leaf 2	0.929
	CRR073302	Leaf 3	0.414
	CRR073303	Juvenile bud 1	0.528
	CRR073304	Juvenile bud 2	0.232
	CRR073305	Juvenile bud 3	0.984
	CRR073306	Third green 1	0.243
	CRR073307	Third green 2	0.188
	CRR073308	Third green 3	0.351
	CRR073309	Second white 1	0.486
	CRR073310	Second white 2	0.436
	CRR073311	Second white 3	0.749
	CRR073312	Silver flowering 1	0.102
	CRR073313	Silver flowering 2	0.388
	CRR073314	Silver flowering 3	0.305
	CRR073315	Gold flowering 1	0.382
	CRR073316	Gold flowering 2	0.797
	CRR073317	Gold flowering 3	0.157
	CRR073318	Tawny withering 1	0.875
	CRR073319	Tawny withering 2	0.440
	CRR073320	Tawny withering 3	0.766