Detail information of GWHGAAZE004214


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281113.10PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera]
COGNP_355291.13E-98ATP-dependent RNA helicase
Swissprottr|Q84W89|RH37_ARATH0DEAD-box ATP-dependent RNA helicase 37
trEMBLtr|F6HLF4|F6HLF4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55215.1}
TAIR10AT3G58570.10P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene113396128113402854-
GWHAAZE00000001mRNA113396128113402854-
GWHAAZE00000001exon113396128113396643-
GWHAAZE00000001exon113397323113397436-
GWHAAZE00000001exon113397796113397963-
GWHAAZE00000001exon113399411113399653-
GWHAAZE00000001exon113401921113402004-
GWHAAZE00000001exon113402105113402854-
GWHAAZE00000001CDS113402105113402854-
GWHAAZE00000001CDS113401921113402004-
GWHAAZE00000001CDS113399411113399653-
GWHAAZE00000001CDS113397796113397963-
GWHAAZE00000001CDS113397323113397436-
GWHAAZE00000001CDS113396128113396643-
Transcript Sequence

Network for GWHGAAZE004214

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD1813616.30E-50
PF00271.32Helicase_C3965115.00E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11594DDX3X, bel RIG-I-like receptor signaling pathway map04622

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.737
SRR3591706second leaf37.104
SRR3591707mature leaf35.540
SRR3591708Shoot apex47.354
SRR3591709Stem49.932
SRR3591710White floral bud111.813
SRR3591711White flower126.426
SRR3591712Green floral bud77.973
SRR3591713Yellow flower90.681
SRP173429 SRR8316895Juvenile bud stage 33.807
SRR8316896Juvenile bud stage 43.023
SRR8316897Juvenile bud stage 21.550
SRR8316894Third green stage 19.710
SRR8316900Third green stage 64.564
SRR8316901Third green stage 61.001
SRR8316898Complete white stage 29.862
SRR8316899Complete white stage 73.292
SRR8316903Complete white stage 68.284
SRR8316902Silver flowering stage52.479
SRR8316904Silver flowering stage71.411
SRR8316905Silver flowering stage34.980
SRR8316906Gold flowering stage 108.080
SRR8316907Gold flowering stage 113.090
SRR8316908Gold flowering stage 115.391
SRP132670SRR6706286Control86.451
SRR6706287Light intensity 50%88.459
SRR6706288Light intensity 20%95.481
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.746
CNS0095593Slightly white alabastrum(diploid) 236.935
CNS0095594Slightly white alabastrum(diploid) 333.876
CNS0095595Whole white alabastrum(diploid) 233.773
CNS0095596Whole white alabastrum(diploid) 332.771
CNS0095597Whole white alabastrum(diploid) 432.016
CNS0095598Silvery flower (diploied) 150.921
CNS0095599Silvery flower (diploied) 249.637
CNS0095600Silvery flower (diploied) 3107.265
CNS0095601Golden flower (diploid) 149.807
CNS0095602Golden flower (diploid) 282.777
CNS0095603Golden flower (diploid) 379.589
CNS0095604Slightly white alabastrum(tetraploid) 140.605
CNS0095605Slightly white alabastrum(tetraploid) 228.148
CNS0095606Slightly white alabastrum(tetraploid) 385.728
CNS0095607Whole white alabastrum(tetraploid) 121.644
CNS0095608Whole white alabastrum(tetraploid) 223.789
CNS0095609Whole white alabastrum(tetraploid) 366.049
CNS0095610Silvery flower (tetraploid) 1134.932
CNS0095611Silvery flower (tetraploid) 2117.493
CNS0095612Silvery flower (tetraploid) 3113.738
CNS0095613Golden flower (tetraploid) 183.478
CNS0095614Golden flower (tetraploid) 2102.961
CNS0095615Golden flower (tetraploid) 398.083
CRA001975CRR073297Stem 143.500
CRR073298Stem 243.158
CRR073299Stem 343.415
CRR073300Leaf 147.374
CRR073301Leaf 244.236
CRR073302Leaf 335.128
CRR073303Juvenile bud 149.722
CRR073304Juvenile bud 243.250
CRR073305Juvenile bud 360.170
CRR073306Third green 158.681
CRR073307Third green 249.370
CRR073308Third green 353.145
CRR073309Second white 164.453
CRR073310Second white 260.481
CRR073311Second white 366.123
CRR073312Silver flowering 175.017
CRR073313Silver flowering 275.441
CRR073314Silver flowering 387.047
CRR073315Gold flowering 130.732
CRR073316Gold flowering 238.508
CRR073317Gold flowering 330.074
CRR073318Tawny withering 139.396
CRR073319Tawny withering 239.258
CRR073320Tawny withering 343.346