Gene detail

Detail information of GWHGAAZE004217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009802815.1	0	PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]
COG	YP_003704177.1	2E-10	Kelch repeat-containing protein
Swissprot	tr\|O80582\|FBK46_ARATH	2E-67	F-box/kelch-repeat protein At2g44130
trEMBL	tr\|M1C6Q7\|M1C6Q7_SOLTU	2E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400060940}
TAIR10	AT2G44130.1	8E-58	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113454511	113455545	+
GWHAAZE00000001	mRNA	113454511	113455545	+
GWHAAZE00000001	exon	113454511	113455545	+
GWHAAZE00000001	CDS	113454511	113455545	+

Transcript Sequence
>GWHTAAZE004223 ATGACACAGTCGGTTACCGAGATAATCCCGGGTTTACCCGAAGAACTAGCTCTCGAGTGCTTGACCAGGTTGCACTACACCGCCCACCAGGTCGGATCCCGGGTCTGCAAGCGATGGCGAGAGCTTCTTCAGAACCGAGACTTCTATTACAATAGGAAAAAAAACGGCTTTACCCATAAAGTGGCTTGTTTGGTCCAATCCCTACCGGTTCAAACCGAATCTGGATCAGGAAAACGGGTTGGGCACCCAAAATACGGAGTTTCCTTTTTTGACCCGGCAACCAGGGATTGGAATCGAGTCGACCCGATTCCAAAGTACCCGGATGGGTTTCCTCTGTTCTGTCAGGTAATTGGGTCGGAGGGGAAATTAGTTGTGATGGGTGGGTGGGACCCGGTTAGTTGGGAACCCATTAAAGACGTGTTTGTGTACGAATTTACGACCCGGGTTTGGACCCAGAAAAAGGACATGCCGGAGACCCGGTCTTTTTTTGCCGCTGGCGAGTCAGGCGGGAGGGTATTCGTTGCCGGCGGGCATGATGAGAGCAAGAACGCTTTGAATTCCGCGTGGGTATATGATTTATTGAAGGACGAGTGGACCGGGTTGACCCGGATGAGTGAAGAAAGAGATGAGTGTGAAGGGGTTGTAATCGGATCGGAGTTTCGGGTCGTGAGCGGGTACGGTACAGAATCTCAAGGTAGGTTTAAGGGTAGCTCCGAATCTTTTGATATCGAGTCGGGTCAGTGGAGCAGGGTCGATGACACGTGGAAGGCCAGCCAGTGCCCGAGGTCTTGTGTGGGTGTGGGCCCAAGCGGGGATTTTGTTTGCTGGGCCGGGTCGGATCCGGAGGTTCGCGTCGGGGTGTGCGGGGTTGACTTGGGTGATATGACCTTGGTGACAGGTTCGGCTTACCAGGGTGCACCTGTGGGGTTCTTTTTGGTGGAGAGGAAGCAAGGGCAAAATGGTAAGTTTGTTAAGATTGATGTGCCTGTTGAGTTCTCGGGTTTTGTGCAATCGGGTTGCAGCGTGGAGATCTGA

Network for GWHGAAZE004217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01344.26	Kelch_1	119	157	1.40E-06
PF01344.26	Kelch_1	160	205	7.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.128
	SRR3591706	second leaf	16.463
	SRR3591707	mature leaf	4.456
	SRR3591708	Shoot apex	36.037
	SRR3591709	Stem	7.330
	SRR3591710	White floral bud	9.919
	SRR3591711	White flower	7.979
	SRR3591712	Green floral bud	10.580
	SRR3591713	Yellow flower	13.634
SRP173429	SRR8316895	Juvenile bud stage	6.535
	SRR8316896	Juvenile bud stage	32.729
	SRR8316897	Juvenile bud stage	3.700
	SRR8316894	Third green stage	2.847
	SRR8316900	Third green stage	10.667
	SRR8316901	Third green stage	13.616
	SRR8316898	Complete white stage	4.262
	SRR8316899	Complete white stage	15.432
	SRR8316903	Complete white stage	11.462
	SRR8316902	Silver flowering stage	1.109
	SRR8316904	Silver flowering stage	0.987
	SRR8316905	Silver flowering stage	0.672
	SRR8316906	Gold flowering stage	3.154
	SRR8316907	Gold flowering stage	4.974
	SRR8316908	Gold flowering stage	3.027
SRP132670	SRR6706286	Control	23.572
	SRR6706287	Light intensity 50%	12.344
	SRR6706288	Light intensity 20%	13.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.974
	CNS0095593	Slightly white alabastrum(diploid) 2	19.374
	CNS0095594	Slightly white alabastrum(diploid) 3	15.057
	CNS0095595	Whole white alabastrum(diploid) 2	17.389
	CNS0095596	Whole white alabastrum(diploid) 3	20.431
	CNS0095597	Whole white alabastrum(diploid) 4	9.527
	CNS0095598	Silvery flower (diploied) 1	25.220
	CNS0095599	Silvery flower (diploied) 2	15.332
	CNS0095600	Silvery flower (diploied) 3	11.192
	CNS0095601	Golden flower (diploid) 1	37.449
	CNS0095602	Golden flower (diploid) 2	49.211
	CNS0095603	Golden flower (diploid) 3	48.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.298
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.116
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.927
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.769
	CNS0095610	Silvery flower (tetraploid) 1	11.928
	CNS0095611	Silvery flower (tetraploid) 2	16.538
	CNS0095612	Silvery flower (tetraploid) 3	4.675
	CNS0095613	Golden flower (tetraploid) 1	13.159
	CNS0095614	Golden flower (tetraploid) 2	18.691
	CNS0095615	Golden flower (tetraploid) 3	16.026
CRA001975	CRR073297	Stem 1	23.088
	CRR073298	Stem 2	19.931
	CRR073299	Stem 3	25.882
	CRR073300	Leaf 1	6.503
	CRR073301	Leaf 2	6.795
	CRR073302	Leaf 3	3.538
	CRR073303	Juvenile bud 1	5.302
	CRR073304	Juvenile bud 2	2.282
	CRR073305	Juvenile bud 3	9.463
	CRR073306	Third green 1	0.519
	CRR073307	Third green 2	0.767
	CRR073308	Third green 3	0.237
	CRR073309	Second white 1	0.047
	CRR073310	Second white 2	0.091
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.127
	CRR073313	Silver flowering 2	1.101
	CRR073314	Silver flowering 3	0.702
	CRR073315	Gold flowering 1	5.340
	CRR073316	Gold flowering 2	11.148
	CRR073317	Gold flowering 3	13.202
	CRR073318	Tawny withering 1	19.614
	CRR073319	Tawny withering 2	2.306
	CRR073320	Tawny withering 3	16.509